Branch Details
Bioinformatics and Biocomputing
Original title in Czech: Bioinformatika a biocomputingFITAbbreviation: MBIAcad. year: 2018/2019
Programme: Information Technology
Length of Study: 2 years
Accredited from: 1.1.2005Accredited until: 31.12.2024
Profile
Students will get acquainted with the advanced algorithms for processing, analysis and presentation of biological data, in particular genomic and proteomic data. In addition to the use of the standard algorithms, students will be able to develop new algorithms in this area. Students will become familiar with the concepts of molecular genetics and with standard biological databases. Students will be able to communicate with biologists and work in multidisciplinary teams. The knowledge acquired by studying the biological systems will be used for understanding bio-inspired computing systems. Students will get acquainted with the principles of natural computing, in particular, with evolutionary design, evolvable systems, DNA computing, fuzzy computing, neural computing and unconventional computing. Students will be able to integrate the bio-inspired principles into existing systems in order to improve their efficiency.
Key learning outcomes
Student of the branch acquire deeper knowledge in the bioinformatics and natural computing. This give him knowledge and skills base to analyse, design and verification of problems of biological databases as well as use, design, implement and accelerate algorithms for analysis of the biological data. He/she is able to apply natural computing algorithms (evolutionary algorithms, artificial neural networks, fuzzy systems etc.) in the complex design and optimization problems.
Occupational profiles of graduates with examples
- A graduate has good insight into bioinformatics and natural computing; he/she is familiar with concepts of molecular genetics. A graduate can utilized biological databases as well as use, design, implement and accelerate algorithms for analysis of the biological data. He/she is able to apply natural computing algorithms (evolutionary algorithms, artificial neural networks, fuzzy systems etc.) in the complex design and optimization problems.
- A graduate has good insight into information technology, particularly into advanced database systems, theoretical computer science, hardware/software codesign and parallel and distributed algorithms.
- A graduate is ready for development, operation and management of bioinformatic computer systems, further for the research and development work in the area of methods, tools and technologies for bio-inspired computing systems. He/she is able to perform an experimental work, analyze and interpret data. He/she is able to work individually or in a team, present the results in written or oral form and further educate him/her-self.
- A carrier is possible in professions such as bioinformatic system developer, system integrator, programmer, and database/information system administrator in biotechnological companies, health service or police. Graduates in this specialization can use their education in development and research divisions of the companies dealing with methods, tools and technologies for bioinformatic system development and further in companies which utilize artificial intelligence principles in their products.
Supervisor
Course structure diagram with ECTS credits
Abbreviation | Title | L. | Cr. | Com. | Compl. | Hod. rozsah | Gr. | Op. |
---|---|---|---|---|---|---|---|---|
BIO | Biometric Systems | cs | 5 | Compulsory | Cr,Ex | P - 39 / L - 6 / PR - 7 | yes | |
MAT | Mathematical Structures in Computer Science | cs, en | 5 | Compulsory | Ex | P - 39 / COZ - 13 | yes | |
BCO_MOG1 | Molecular Genetics I | cs | 3 | Compulsory | Ex | P - 26 | yes | |
PDB | Advanced Database Systems | cs, en | 5 | Compulsory | Cr,Ex | P - 26 / COZ - 6 / Cp - 6 / PR - 14 | yes | |
TIN | Theoretical Computer Science | cs | 5 | Compulsory | Cr,Ex | P - 39 / PR - 13 | yes | |
STI | Theoretical Computer Science Seminar | cs | 2 | Elective | Cr | COZ - 26 | yes |
Abbreviation | Title | L. | Cr. | Com. | Compl. | Hod. rozsah | Gr. | Op. |
---|---|---|---|---|---|---|---|---|
BIF | Bioinformatics | cs | 5 | Compulsory | Ex | P - 26 / Cp - 12 / PR - 14 | yes | |
BIN | Bio-Inspired Computers | cs | 5 | Compulsory | Ex | P - 26 / Cp - 8 / PR - 18 | yes | |
PRL | Parallel and Distributed Algorithms | cs | 5 | Compulsory | Cr,Ex | P - 39 / PR - 13 | yes | |
PP1 | Project Practice 1 | cs, en | 5 | Elective | Cr | PR - 52 | yes |
Abbreviation | Title | L. | Cr. | Com. | Compl. | Hod. rozsah | Gr. | Op. |
---|---|---|---|---|---|---|---|---|
PBI | Advanced Bioinformatics | cs | 4 | Compulsory | Ex | P - 20 / Cp - 13 / PR - 6 | yes | |
SEP | Semester Project | cs, en | 5 | Compulsory | GCr | PR - 65 | yes | |
SFC | Soft Computing | cs | 5 | Compulsory | Cr,Ex | P - 26 / PR - 26 | yes | |
THE | Game Theory | cs | 4 | Compulsory | Cr,Ex | P - 26 / PR - 13 | yes | |
ZZN | Knowledge Discovery in Databases | cs | 5 | Compulsory | Cr,Ex | P - 39 / PR - 13 | yes | |
PP2 | Project Practice 2 | cs | 5 | Elective | GCr | PR - 52 | yes |
Abbreviation | Title | L. | Cr. | Com. | Compl. | Hod. rozsah | Gr. | Op. |
---|---|---|---|---|---|---|---|---|
DIP | Master's Thesis | cs, en | 13 | Compulsory | Cr | PR - 169 | yes |
Abbreviation | Title | L. | Cr. | Com. | Compl. | Hod. rozsah | Gr. | Op. |
---|---|---|---|---|---|---|---|---|
JA3 | Conversation through Hot Current Issues | cs, en | 3 | Compulsory-optional | Cr,Ex | COZ - 26 | Social Course | yes |
AEU | English for Europe | cs, en | 3 | Compulsory-optional | Cr,Ex | COZ - 26 | Social Course | yes |
FCE | English: Preparatory Course for FCE Exam | cs, en | 3 | Compulsory-optional | Cr | COZ - 26 | Social Course | yes |
BIS | Information System Security | cs | 5 | Compulsory-optional | Cr,Ex | P - 39 / PR - 13 | Operating Systems and Security | yes |
FIT | History and Philosophy of Technology | cs, en | 3 | Compulsory-optional | Cr | P - 26 | Social Course | yes |
HSC | Hardware/Software Codesign | cs, en | 5 | Compulsory-optional | Cr,Ex | P - 39 / PR - 13 | Hardware and Networks | yes |
SIN | Intelligent Systems | cs | 5 | Compulsory-optional | Ex | P - 26 / COZ - 6 / PR - 20 | Modern Artificial Intelligence | yes |
HKO | Communication Skills | cs, en | 3 | Compulsory-optional | Cr | COZ - 26 | Social Course | yes |
HKA | Assertiveness and Conflicts | cs | 3 | Compulsory-optional | Cr | COZ - 26 | Social Course | yes |
PCS | Advanced Digital Systems | cs | 5 | Compulsory-optional | Ex | P - 26 / Cp - 10 / PR - 16 | Hardware and Networks | yes |
PRM | Fundamentals of Law | cs, en | 3 | Compulsory-optional | Cr | P - 26 | Social Course | yes |
HPR | Presentation Skills | cs | 3 | Compulsory-optional | Cr | COZ - 26 | Social Course | yes |
HPO | Personality Psychology | cs | 3 | Compulsory-optional | Cr | COZ - 26 | Social Course | yes |
RET | Rhetoric | cs, en | 3 | Compulsory-optional | Cr | P - 26 | Social Course | yes |
HVR | Leadership and People Management | cs, en | 3 | Compulsory-optional | Cr | COZ - 26 | Social Course | yes |
ZPJa | Natural Language Processing (in English) | en | 5 | Compulsory-optional | Ex | P - 26 / PR - 26 | Data and Signal Processing | no |
AIS | Information Systems Analysis and Design | cs | 5 | Elective | Cr,Ex | P - 39 / PR - 13 | yes | |
ACH | Processor Architecture | cs | 5 | Elective | Cr,Ex | P - 26 / Cp - 10 / PR - 16 | yes | |
BMS | Wireless and Mobile Networks | cs | 5 | Elective | Cr,Ex | P - 39 / PR - 13 | yes | |
C3P | Troubleshooting and Maintaining Cisco IP Networks (TSHOOT) | cs | 5 | Elective | GCr | L - 52 | yes | |
EIP | Economics of Information Products | cs | 5 | Elective | Ex | P - 26 / COZ - 6 / Cp - 12 / PR - 8 | yes | |
FAV | Formal Analysis and Verification | cs | 5 | Elective | Cr,Ex | P - 39 / PR - 13 | yes | |
GZN | Graphical and Sound Interfaces and Standards | cs | 5 | Elective | Ex | P - 26 / Cp - 12 / PR - 14 | yes | |
GJA | Graphical User Interfaces in Java | cs, en | 5 | Elective | Cr,Ex | P - 26 / PR - 26 | yes | |
GUX | Graphical User Interfaces in X Window System | cs | 5 | Elective | Ex | P - 26 / PR - 26 | yes | |
GMU | Graphic and Multimedia Processors | cs | 5 | Elective | Cr,Ex | P - 26 / Cp - 8 / PR - 18 | yes | |
GAL | Graph Algorithms | cs, en | 5 | Elective | Ex | P - 39 / PR - 13 | yes | |
SEN | Intelligent Sensors | cs | 5 | Elective | Cr,Ex | P - 26 / COZ - 4 / L - 4 / PR - 18 | yes | |
MMOB | Biological System Modelling | cs | 4 | Elective | Cr,Ex | P - 26 / Cp - 13 | no | |
PGR | Computer Graphics | cs, en | 5 | Elective | Ex | P - 39 / Cp - 6 / PR - 7 | yes | |
POVa | Computer Vision (in English) | en | 5 | Elective | Ex | P - 26 / PR - 26 | yes | |
PGPa | Advanced Computer Graphics (in English) | en | 5 | Elective | Ex | P - 26 / PR - 26 | yes | |
PKS | Advanced Communication Systems | cs | 5 | Elective | Cr,Ex | P - 39 / L - 6 / PR - 7 | yes | |
PDI | Distributed Application Environment | cs, en | 5 | Elective | Ex | P - 26 / Cp - 6 / PR - 20 | yes | |
ROSa | Real-Time Operating Systems (in English) | en | 5 | Elective | Ex | P - 26 / Cp - 10 / PR - 16 | yes | |
ROBa | Robotics (in English) | en | 5 | Elective | Ex | P - 26 / L - 6 / PR - 20 | yes | |
SMT | Seminar of Mathematical Structures | cs | 2 | Elective | Cr | COZ - 26 | yes | |
SRI | Strategic Management of Information Systems | cs | 5 | Elective | Ex | P - 26 / COZ - 2 / Cp - 4 / PR - 20 | yes | |
TAMa | Application Development for Mobile Devices (in English) | en | 5 | Elective | GCr | P - 26 / PR - 26 | yes | |
VYPa | Compiler Construction (in English) | en | 5 | Elective | Ex | P - 39 / PR - 13 | yes | |
VIN | Computer Art | cs | 5 | Elective | GCr | P - 26 / PR - 26 | yes | |
ZPX | Professional Practice, Abroad | en | 5 | Elective | Cr | PR - 52 | yes |
Abbreviation | Title | L. | Cr. | Com. | Compl. | Hod. rozsah | Gr. | Op. |
---|---|---|---|---|---|---|---|---|
AGS | Agents and Multiagent Systems | cs | 5 | Compulsory-optional | Ex | P - 26 / Cp - 13 / PR - 13 | Modern Artificial Intelligence | yes |
JA3 | Conversation through Hot Current Issues | cs, en | 3 | Compulsory-optional | Cr,Ex | COZ - 26 | Social Course | yes |
AEU | English for Europe | cs, en | 3 | Compulsory-optional | Cr,Ex | COZ - 26 | Social Course | yes |
EVO | Applied Evolutionary Algorithms | cs | 5 | Compulsory-optional | Ex | P - 26 / Cp - 12 / PR - 14 | Modern Artificial Intelligence | yes |
ARC | Parallel System Architecture and Programming | cs | 5 | Compulsory-optional | Cr,Ex | P - 26 / Cp - 12 / PR - 14 | Hardware and Networks | yes |
FIT | History and Philosophy of Technology | cs, en | 3 | Compulsory-optional | Cr | P - 26 | Social Course | no |
FIK | Philosophy and the Culture | cs, en | 3 | Compulsory-optional | Cr | P - 26 | Social Course | yes |
KKO | Data Coding and Compression | cs | 5 | Compulsory-optional | Cr,Ex | P - 26 / PR - 26 | Data and Signal Processing | yes |
HKO | Communication Skills | cs, en | 3 | Compulsory-optional | Cr | COZ - 26 | Social Course | yes |
HKA | Assertiveness and Conflicts | cs | 3 | Compulsory-optional | Cr | COZ - 26 | Social Course | yes |
KRY | Cryptography | cs | 5 | Compulsory-optional | Cr,Ex | P - 39 / PR - 13 | Operating Systems and Security | yes |
NAV | Design of External Adapters and Embedded Systems | cs | 5 | Compulsory-optional | Ex | P - 26 / L - 16 / PR - 10 | Hardware and Networks | yes |
NSB | Projecting, Administration and Security | cs | 5 | Compulsory-optional | Cr,Ex | P - 26 / L - 12 / PR - 6 | Operating Systems and Security | yes |
POS | Advanced Operating Systems | cs | 5 | Compulsory-optional | Ex | P - 39 / PR - 13 | Operating Systems and Security | yes |
PRM | Fundamentals of Law | cs, en | 3 | Compulsory-optional | Cr | P - 26 | Social Course | yes |
HPR | Presentation Skills | cs | 3 | Compulsory-optional | Cr | COZ - 26 | Social Course | yes |
PDS | Data Communications, Computer Networks and Protocols | cs, en | 5 | Compulsory-optional | Ex | P - 39 / COZ - 4 / L - 2 / PR - 7 | Hardware and Networks | yes |
HPO | Personality Psychology | cs | 3 | Compulsory-optional | Cr | COZ - 26 | Social Course | yes |
RET | Rhetoric | cs, en | 3 | Compulsory-optional | Cr | P - 26 | Social Course | yes |
SNT | Simulation Tools and Techniques | cs | 5 | Compulsory-optional | Cr,Ex | P - 39 / PR - 13 | Modern Artificial Intelligence | yes |
HVR | Leadership and People Management | cs, en | 3 | Compulsory-optional | Cr | COZ - 26 | Social Course | yes |
ZRE | Speech Signal Processing | cs, en | 5 | Compulsory-optional | Ex | P - 26 / COZ - 2 / Cp - 12 / PR - 12 | Data and Signal Processing | yes |
BZA | Secure Hardware Devices | cs | 5 | Elective | Ex | P - 39 / PR - 13 | yes | |
DFAa | Digital Forensics (in English) | en | 5 | Elective | Ex | P - 26 / L - 12 / PR - 14 | yes | |
DJA | Dynamic Languages | cs | 5 | Elective | Ex | P - 26 / PR - 26 | yes | |
FLP | Functional and Logic Programming | cs | 5 | Elective | Cr,Ex | P - 26 / Cp - 12 / PR - 14 | yes | |
FVS | Functional Verification of Digital Systems | cs | 5 | Elective | Ex | P - 26 / L - 8 / PR - 18 | no | |
FYO | Physical Optics | cs, en | 5 | Elective | Ex | P - 26 / COZ - 13 / PR - 13 | yes | |
GIS | Geographical Information Systems | cs | 5 | Elective | Cr,Ex | P - 26 / Cp - 10 / PR - 16 | yes | |
WAP | Internet Applications | cs | 5 | Elective | Cr,Ex | P - 39 / PR - 13 | yes | |
LOG | Logic | cs | 5 | Elective | Cr,Ex | P - 26 / COZ - 26 | yes | |
MPR | Project Management | cs | 5 | Elective | Cr,Ex | P - 26 / COZ - 4 / Cp - 2 / PR - 20 | yes | |
MEK | Economics for Managers | cs | 5 | Elective | Cr,Ex | P - 26 / COZ - 26 | yes | |
HMR | Marketing | cs | 5 | Elective | Cr,Ex | P - 26 / C1 - 26 | yes | |
MMAT | Matrices and Tensors Calculus | cs | 5 | Elective | Cr,Ex | P - 26 / CPP - 18 / O - 8 | yes | |
MUL | Multimedia | cs, en | 5 | Elective | Ex | P - 26 / Cp - 13 / PR - 13 | yes | |
OPM | Optimization | cs | 4 | Elective | Cr,Ex | P - 26 / Cp - 13 | yes | |
PES | Petri Nets | cs | 5 | Elective | Ex | P - 39 / Cp - 6 / PR - 7 | yes | |
PIS | Advanced Information Systems | cs | 5 | Elective | Cr,Ex | P - 39 / PR - 13 | yes | |
PMA | Project Manager | cs | 5 | Elective | GCr | P - 26 / COZ - 26 | yes | |
C2P | Implementing Cisco IP Switched Networks (SWITCH) | cs | 5 | Elective | GCr | L - 52 | no | |
SLOa | Complexity (in English) | en | 5 | Elective | Ex | P - 26 / PR - 26 | yes | |
C1P | Implementing Cisco IP Routing (ROUTE) | cs | 5 | Elective | GCr | L - 52 | yes | |
SSP | Stochastic Processes | cs | 4 | Elective | Cr,Ex | P - 26 / CPP - 13 | yes | |
FSYS | System Biology | cs | 5 | Elective | Cr,Ex | P - 26 / Cp - 26 | yes | |
SPP | Fault Tolerant Systems | cs | 5 | Elective | Cr,Ex | P - 26 / PR - 26 | yes | |
UXIa | User Experience and Design of User Interfaces and Services (in English) | en | 5 | Elective | GCr | P - 16 / COZ - 10 / PR - 26 | yes | |
VIZa | Visualization and CAD (in English) | en | 5 | Elective | GCr | P - 26 / Cp - 12 / PR - 14 | yes | |
VYF | Computational Photography | cs | 5 | Elective | GCr | P - 26 / PR - 26 | yes | |
VGE | Computational Geometry | cs, en | 5 | Elective | Ex | P - 26 / PR - 26 | yes | |
VNV | High Performance Computations | cs, en | 5 | Elective | Ex | P - 26 / Cp - 26 | yes | |
MMZS | Advanced Methods of Signal Processing | cs | 6 | Elective | Cr,Ex | P - 39 / Cp - 26 | yes | |
ZPX | Professional Practice, Abroad | en | 5 | Elective | Cr | PR - 52 | yes | |
ZPO | Image Processing | cs, en | 5 | Elective | Ex | P - 26 / PR - 26 | yes |
All the groups of optional courses | ||
---|---|---|
Gr. | Min. courses | Courses |
Data and Signal Processing | 1 | ZPJa |
Operating Systems and Security | 1 | BIS |
Modern Artificial Intelligence | 1 | SIN |
Social Course | 1 | JA3, AEU, FCE, FIT, HKO, HKA, PRM, HPR, HPO, RET, HVR |
Hardware and Networks | 1 | HSC, PCS |
Social Course | 1 | JA3, AEU, FIT, FIK, HKO, HKA, PRM, HPR, HPO, RET, HVR |
Data and Signal Processing | 1 | KKO, ZRE |
Operating Systems and Security | 1 | KRY, NSB, POS |
Hardware and Networks | 1 | ARC, NAV, PDS |
Modern Artificial Intelligence | 1 | AGS, EVO, SNT |