Branch Details

Bioinformatics and Biocomputing

Original title in Czech: Bioinformatika a biocomputingFITAbbreviation: MBIAcad. year: 2019/2020

Programme: Information Technology

Length of Study: 2 years

Accredited from: 1.1.2005Accredited until: 31.12.2024

Profile

Students will get acquainted with the advanced algorithms for processing, analysis and presentation of biological data, in particular genomic and proteomic data. In addition to the use of the standard algorithms, students will be able to develop new algorithms in this area. Students will become familiar with the concepts of molecular genetics and with standard biological databases. Students will be able to communicate with biologists and work in multidisciplinary teams. The knowledge acquired by studying the biological systems will be used for understanding bio-inspired computing systems. Students will get acquainted with the principles of natural computing, in particular, with evolutionary design, evolvable systems, DNA computing, fuzzy computing, neural computing and unconventional computing. Students will be able to integrate the bio-inspired principles into existing systems in order to improve their efficiency.

Key learning outcomes

Student of the branch acquire deeper knowledge in the bioinformatics and natural computing. This give him knowledge and skills base to analyse, design and verification of problems of biological databases as well as use, design, implement and accelerate algorithms for analysis of the biological data. He/she is able to apply natural computing algorithms (evolutionary algorithms, artificial neural networks, fuzzy systems etc.) in the complex design and optimization problems.

Supervisor


Course structure diagram with ECTS credits

1. year of study, winter semester
AbbreviationTitleL.Cr.Com.Compl.Hod. rozsahGr.Op.
BIOBiometric Systemscs5CompulsoryCr,ExP - 39 / L - 6 / PR - 7yes
MATMathematical Structures in Computer Sciencecs, en5CompulsoryExP - 39 / COZ - 13yes
BC_MOG1Molecular Genetics Ics3CompulsoryExP - 26yes
PDBAdvanced Database Systemscs, en5CompulsoryCr,ExP - 26 / COZ - 6 / Cp - 6 / PR - 14yes
TINTheoretical Computer Sciencecs7CompulsoryCr,ExP - 39 / COZ - 26 / PR - 13yes
SMTSeminar of Mathematical Structurescs2OptionalCrCOZ - 26yes
1. year of study, summer semester
AbbreviationTitleL.Cr.Com.Compl.Hod. rozsahGr.Op.
BIFBioinformaticscs5CompulsoryExP - 26 / Cp - 12 / PR - 14yes
BINBio-Inspired Computerscs5CompulsoryExP - 26 / Cp - 8 / PR - 18yes
PRLParallel and Distributed Algorithmscs5CompulsoryCr,ExP - 39 / PR - 13yes
PP1Project Practice 1cs, en5OptionalCrPR - 52yes
2. year of study, winter semester
AbbreviationTitleL.Cr.Com.Compl.Hod. rozsahGr.Op.
PBIAdvanced Bioinformaticscs4CompulsoryExP - 20 / Cp - 13 / PR - 6yes
SEPSemester Projectcs, en5CompulsoryGCrPR - 65yes
SFCSoft Computingcs5CompulsoryCr,ExP - 26 / PR - 26yes
THEGame Theorycs5CompulsoryCr,ExP - 26 / PR - 26yes
ZZNKnowledge Discovery in Databasescs5CompulsoryCr,ExP - 39 / PR - 13yes
PP2Project Practice 2cs5OptionalGCrPR - 52yes
2. year of study, summer semester
AbbreviationTitleL.Cr.Com.Compl.Hod. rozsahGr.Op.
DIPMaster's Thesiscs, en13CompulsoryCrPR - 169yes
Any year of study, winter semester
AbbreviationTitleL.Cr.Com.Compl.Hod. rozsahGr.Op.
AGSAgents and Multiagent Systemscs5Compulsory-optionalExP - 26 / Cp - 13 / PR - 13Modern Artificial Intelligenceyes
JA3Conversation through Hot Current Issuescs, en3Compulsory-optionalCr,ExCOZ - 26Social Courseyes
FCEEnglish: Practical Course of Business Conversation and Presentationcs, en3Compulsory-optionalCrCOZ - 26Social Courseyes
AEUEnglish for Europecs, en3Compulsory-optionalCr,ExCOZ - 26Social Courseyes
BISInformation System Securitycs5Compulsory-optionalCr,ExP - 39 / PR - 13Operating Systems and Securityyes
FITHistory and Philosophy of Technologycs, en3Compulsory-optionalCrP - 26Social Courseyes
FIKPhilosophy and the Culturecs, en3Compulsory-optionalCrP - 26Social Courseno
HSCHardware/Software Codesigncs, en5Compulsory-optionalCr,ExP - 39 / PR - 13Hardware and Networksyes
SINIntelligent Systemscs5Compulsory-optionalExP - 26 / COZ - 4 / PR - 22Modern Artificial Intelligenceyes
HKOCommunication and Presentation Skillscs, en3Compulsory-optionalCrCOZ - 26Social Courseyes
HVRLeadership and Time Managementcs, en3Compulsory-optionalCrCOZ - 26Social Courseyes
PCSAdvanced Digital Systemscs5Compulsory-optionalExP - 26 / Cp - 10 / PR - 16Hardware and Networksyes
PRMFundamentals of Lawcs, en3Compulsory-optionalCrP - 26Social Courseyes
RETRhetoriccs, en3Compulsory-optionalCrP - 26Social Courseyes
ZPJaNatural Language Processing (in English)en5Compulsory-optionalExP - 26 / PR - 26Data and Signal Processingyes
AISInformation Systems Analysis and Designcs5OptionalCr,ExP - 39 / PR - 13yes
AVSComputation Systems Architecturescs5OptionalCr,ExP - 26 / Cp - 12 / PR - 14yes
BMSWireless and Mobile Networkscs5OptionalCr,ExP - 39 / PR - 13yes
EIPEconomics of Information Productscs5OptionalExP - 26 / COZ - 6 / Cp - 12 / PR - 8no
GZNGraphical and Sound Interfaces and Standardscs5OptionalExP - 26 / Cp - 12 / PR - 14yes
GJAGraphical User Interfaces in Javacs, en5OptionalCr,ExP - 26 / PR - 26yes
GUXGraphical User Interfaces in X Window Systemcs5OptionalExP - 26 / PR - 26yes
GMUGraphic and Multimedia Processorscs5OptionalCr,ExP - 26 / Cp - 8 / PR - 18yes
GALGraph Algorithmscs, en5OptionalExP - 39 / PR - 13yes
PGRComputer Graphicscs, en5OptionalExP - 39 / Cp - 6 / PR - 7yes
POVaComputer Vision (in English)en5OptionalExP - 26 / PR - 26yes
PGPaAdvanced Computer Graphics (in English)en5OptionalExP - 26 / PR - 26yes
PKSAdvanced Communication Systemscs5OptionalCr,ExP - 39 / L - 6 / PR - 7yes
PDIDistributed Application Environmentcs, en5OptionalExP - 26 / Cp - 6 / PR - 20yes
ROBaRobotics (in English)en5OptionalExP - 26 / L - 6 / PR - 20yes
SEMSensors and Measurementcs5OptionalCr,ExP - 26 / COZ - 6 / L - 6 / PR - 14yes
C2PImplementing Cisco IP Switched Networks (SWITCH)cs5OptionalGCrL - 52yes
SAVStatic Analysis and Verificationcs5OptionalCr,ExP - 39 / PR - 13yes
SRIStrategic Management of Information Systemscs5OptionalExP - 26 / COZ - 2 / Cp - 4 / PR - 20yes
RTSaReal-Time Systems (in English)en5OptionalExP - 26 / Cp - 10 / PR - 16yes
TAMaApplication Development for Mobile Devices (in English)en5OptionalGCrP - 26 / PR - 26yes
VYPaCompiler Construction (in English)en5OptionalExP - 39 / PR - 13yes
VINComputer Artcs5OptionalGCrP - 26 / PR - 26yes
ZPXProfessional Practice, Abroaden5OptionalCrPR - 52yes
Any year of study, summer semester
AbbreviationTitleL.Cr.Com.Compl.Hod. rozsahGr.Op.
JA3Conversation through Hot Current Issuescs, en3Compulsory-optionalCr,ExCOZ - 26Social Courseyes
AEUEnglish for Europecs, en3Compulsory-optionalCr,ExCOZ - 26Social Courseyes
EVOApplied Evolutionary Algorithmscs5Compulsory-optionalExP - 26 / Cp - 12 / PR - 14Modern Artificial Intelligenceyes
FITHistory and Philosophy of Technologycs, en3Compulsory-optionalCrP - 26Social Courseno
FIKPhilosophy and the Culturecs, en3Compulsory-optionalCrP - 26Social Courseyes
KKOData Coding and Compressioncs5Compulsory-optionalCr,ExP - 26 / PR - 26Data and Signal Processingyes
KRYCryptographycs5Compulsory-optionalCr,ExP - 39 / PR - 13Operating Systems and Securityyes
HKOCommunication and Presentation Skillscs, en3Compulsory-optionalCrCOZ - 26Social Courseyes
HVRLeadership and Time Managementcs, en3Compulsory-optionalCrCOZ - 26Social Courseyes
NSBProjecting, Administration and Securitycs5Compulsory-optionalCr,ExP - 26 / L - 12 / PR - 6Operating Systems and Securityyes
NAVDesign of Embedded Systemscs5Compulsory-optionalExP - 26 / L - 16 / PR - 10Hardware and Networksyes
POSAdvanced Operating Systemscs5Compulsory-optionalExP - 39 / PR - 13Operating Systems and Securityyes
PPPPractical Parallel Programmingcs5Compulsory-optionalCr,ExP - 26 / Cp - 16 / PR - 10Hardware and Networksyes
PRMFundamentals of Lawcs, en3Compulsory-optionalCrP - 26Social Courseyes
PDSData Communications, Computer Networks and Protocolscs, en5Compulsory-optionalExP - 39 / COZ - 4 / L - 2 / PR - 26Hardware and Networksyes
RETRhetoriccs, en3Compulsory-optionalCrP - 26Social Courseyes
SNTSimulation Tools and Techniquescs5Compulsory-optionalCr,ExP - 39 / PR - 13Modern Artificial Intelligenceyes
ZRESpeech Signal Processingcs, en5Compulsory-optionalExP - 26 / COZ - 2 / Cp - 12 / PR - 12Data and Signal Processingyes
MBAModel-Based Analysiscs5OptionalExP - 39 / Cp - 6 / PR - 7yes
BZASecure Hardware Devicescs5OptionalExP - 39 / PR - 13yes
CSOaCCNA Cybersecurity Operations (in English)en5OptionalGCrP - 26 / L - 26yes
C3PTroubleshooting and Maintaining Cisco IP Networks (TSHOOT)cs5OptionalGCrL - 52yes
DFAaDigital Forensics (in English)en5OptionalExP - 26 / L - 12 / PR - 14yes
DJADynamic Languagescs5OptionalExP - 26 / PR - 26yes
FLPFunctional and Logic Programmingcs5OptionalCr,ExP - 26 / Cp - 12 / PR - 14yes
FVSFunctional Verification of Digital Systemscs5OptionalExP - 26 / L - 8 / PR - 18yes
FYOPhysical Opticscs, en5OptionalExP - 26 / COZ - 13 / PR - 13yes
GISGeographical Information Systemscs5OptionalCr,ExP - 26 / Cp - 10 / PR - 16no
WAPInternet Applicationscs5OptionalCr,ExP - 39 / PR - 13yes
LOGLogiccs5OptionalCr,ExP - 26 / COZ - 26yes
MPRProject Managementcs5OptionalCr,ExP - 26 / COZ - 4 / Cp - 2 / PR - 20yes
MEKEconomics for Managerscs5OptionalCr,ExP - 26 / COZ - 26no
HMRMarketingcs5OptionalCr,ExP - 26 / C1 - 26yes
MMATMatrices and Tensors Calculuscs5OptionalCr,ExP - 26 / CPP - 18 / O - 8yes
MULMultimediacs, en5OptionalExP - 26 / Cp - 13 / PR - 13yes
OPMOptimizationcs4OptionalCr,ExP - 26 / Cp - 13yes
PISAdvanced Information Systemscs5OptionalCr,ExP - 39 / PR - 13yes
PMAProject Managercs5OptionalGCrP - 26 / COZ - 26yes
SLOaComplexity (in English)en5OptionalExP - 26 / PR - 26yes
C1PImplementing Cisco IP Routing (ROUTE)cs5OptionalGCrL - 52no
SSPStochastic Processescs4OptionalCr,ExP - 26 / CPP - 13yes
STMStrategic Managementcs5OptionalCr,ExP - 26 / COZ - 13 / PR - 13no
MPC-SYSSystem Biologycs5OptionalCr,ExP - 26 / Cp - 26yes
SPPFault Tolerant Systemscs5OptionalCr,ExP - 26 / PR - 26yes
UXIaUser Experience and Design of User Interfaces and Services (in English)en5OptionalGCrP - 16 / COZ - 10 / PR - 26yes
VIZaVisualization and CAD (in English)en5OptionalGCrP - 26 / Cp - 12 / PR - 14yes
VYFComputational Photographycs5OptionalGCrP - 26 / PR - 26yes
VGEComputational Geometrycs, en5OptionalExP - 26 / PR - 26yes
VNVHigh Performance Computationscs, en5OptionalExP - 26 / Cp - 26yes
ZPXProfessional Practice, Abroaden5OptionalCrPR - 52yes
ZPOImage Processingcs, en5OptionalExP - 26 / PR - 26yes
All the groups of optional courses
Gr. Min. courses Courses
Data and Signal Processing 1 ZPJa
Operating Systems and Security 1 BIS
Modern Artificial Intelligence 1 AGS, SIN
Social Course 1 JA3, FCE, AEU, FIT, FIK, HKO, HVR, PRM, RET
Hardware and Networks 1 HSC, PCS
Social Course 1 JA3, AEU, FIT, FIK, HKO, HVR, PRM, RET
Data and Signal Processing 1 KKO, ZRE
Operating Systems and Security 1 KRY, NSB, POS
Hardware and Networks 1 NAV, PPP, PDS
Modern Artificial Intelligence 1 EVO, SNT