Publication detail

Relationship of bacteria using comparison of whole genome sequences in frequency domain

KUBICOVÁ, V. PROVAZNÍK, I.

Original Title

Relationship of bacteria using comparison of whole genome sequences in frequency domain

English Title

Relationship of bacteria using comparison of whole genome sequences in frequency domain

Type

journal article

Language

en

Original Abstract

We propose a new method for determination of relationship of bacteria based on whole genome data. The method compares whole genomic DNA sequences in frequency domain. The proposed method was tested on phyla level on 168 bacteria from four phyla and on order level – 121 bacteria from phylum Proteobacteria, class Gammaproteobacteria were classified. The classification on both levels was successful in more than 82%.

English abstract

We propose a new method for determination of relationship of bacteria based on whole genome data. The method compares whole genomic DNA sequences in frequency domain. The proposed method was tested on phyla level on 168 bacteria from four phyla and on order level – 121 bacteria from phylum Proteobacteria, class Gammaproteobacteria were classified. The classification on both levels was successful in more than 82%.

Keywords

relationship of bacteria, whole genome comparison, DNA spectrogram

RIV year

2014

Released

02.06.2014

Publisher

Springer International Publishing

Pages from

397

Pages to

408

Pages count

12

BibTex


@article{BUT107919,
  author="Vladimíra {Kubicová} and Ivo {Provazník}",
  title="Relationship of bacteria using comparison of whole genome sequences in frequency domain",
  annote="We propose a new method for determination of relationship of bacteria based on whole genome data. The method compares whole genomic DNA sequences in frequency domain. The proposed method was tested on phyla level on 168 bacteria from four phyla and on order level – 121 bacteria from phylum Proteobacteria, class Gammaproteobacteria were classified. The classification on both levels was successful in more than 82%.",
  address="Springer International Publishing",
  chapter="107919",
  doi="10.1007/978-3-319-06593-9_35",
  institution="Springer International Publishing",
  number="6",
  volume="283",
  year="2014",
  month="june",
  pages="397--408",
  publisher="Springer International Publishing",
  type="journal article"
}