Detail publikace

Relationship of bacteria using comparison of whole genome sequences in frequency domain

Originální název

Relationship of bacteria using comparison of whole genome sequences in frequency domain

Anglický název

Relationship of bacteria using comparison of whole genome sequences in frequency domain

Jazyk

en

Originální abstrakt

We propose a new method for determination of relationship of bacteria based on whole genome data. The method compares whole genomic DNA sequences in frequency domain. The proposed method was tested on phyla level on 168 bacteria from four phyla and on order level – 121 bacteria from phylum Proteobacteria, class Gammaproteobacteria were classified. The classification on both levels was successful in more than 82%.

Anglický abstrakt

We propose a new method for determination of relationship of bacteria based on whole genome data. The method compares whole genomic DNA sequences in frequency domain. The proposed method was tested on phyla level on 168 bacteria from four phyla and on order level – 121 bacteria from phylum Proteobacteria, class Gammaproteobacteria were classified. The classification on both levels was successful in more than 82%.

BibTex


@article{BUT107919,
  author="Vladimíra {Kubicová} and Ivo {Provazník}",
  title="Relationship of bacteria using comparison of whole genome sequences in frequency domain",
  annote="We propose a new method for determination of relationship of bacteria based on whole genome data. The method compares whole genomic DNA sequences in frequency domain. The proposed method was tested on phyla level on 168 bacteria from four phyla and on order level – 121 bacteria from phylum Proteobacteria, class Gammaproteobacteria were classified. The classification on both levels was successful in more than 82%.",
  address="Springer International Publishing",
  chapter="107919",
  doi="10.1007/978-3-319-06593-9_35",
  institution="Springer International Publishing",
  number="6",
  volume="283",
  year="2014",
  month="june",
  pages="397--408",
  publisher="Springer International Publishing",
  type="journal article"
}