Project detail

Moderní přístupy v analýze signálů, systémů a dat v biomedicínských aplikacích

Duration: 01.01.2020 — 31.12.2022

On the project

Projekt je zaměřen obecně na aplikace inženýrských principů do oblastí biomedicíny, biologie a bioinformatiky. V těchto oblastech se zaměřuje na konkrétní témata, která jsou dlouhodobě předmětem výzkumu na UBMI. Jde zejména o zpracování a analýzu biosignálů (EKG, EMG, polysomnografie), zpracování a analýzu obrazů z různých zobrazovacích modalit (především optické zobrazování, MRI a CT), výzkum viability buněk pomocí mikroskopických metod a aplikace pokročilých matematických metod pro zpracování a analýzu genomických signálů.

Mark

FEKT-S-20-6195

Default language

Czech

People responsible

Bartoň Vojtěch, Ing. - fellow researcher
Čejková Darina, Mgr. Bc., Ph.D. - fellow researcher
Čmiel Vratislav, Ing., Ph.D. - fellow researcher
Enikeev Amir, Ing. - fellow researcher
Harabiš Vratislav, Ing., Ph.D. - fellow researcher
Hejč Jakub, Ing. - fellow researcher
Hesko Branislav, Ing. - fellow researcher
Hracho Michal, Ing. - fellow researcher
Chmelík Jiří, Ing., Ph.D. - fellow researcher
Chmelíková Larisa - fellow researcher
Jakubíček Roman, Ing., Ph.D. - fellow researcher
Janoušek Oto, Ing., Ph.D. - fellow researcher
Jugas Robin, Ing. - fellow researcher
Jurečková Kateřina, Ing. - fellow researcher
Kašpar Jakub, Ing. - fellow researcher
Kolářová Jana, doc. Ing., Ph.D. - fellow researcher
Kozumplík Jiří, doc. Ing., CSc. - fellow researcher
Králík Martin, Ing. - fellow researcher
Maršánová Lucie, Ing. - fellow researcher
Mézl Martin, Ing., Ph.D. - fellow researcher
Musilová Jana, Ing. - fellow researcher
Němcová Andrea, Ing. - fellow researcher
Novotná Petra, Ing. - fellow researcher
Nykrýnová Markéta, Ing. - fellow researcher
Odstrčilík Jan, Ing., Ph.D. - fellow researcher
Paštěka Richard, Ing., MSc - fellow researcher
Provazník Ivo, prof. Ing., Ph.D. - fellow researcher
Ronzhina Marina, Ing., Ph.D. - fellow researcher
Roy Sudeep, Ph.D. - fellow researcher
Sedlář Karel, Mgr. Ing., Ph.D. - fellow researcher
Smíšek Radovan, Ing. - fellow researcher
Smital Lukáš, Ing., Ph.D. - fellow researcher
Svozilová Veronika, Ing. - fellow researcher
Škutková Helena, Ing., Ph.D. - fellow researcher
Tyagi Atul, M.Sc., Ph.D. - fellow researcher
Valterová Eva, Ing. - fellow researcher
Vičar Tomáš, Ing. - fellow researcher
Vítek Martin, Ing., Ph.D. - fellow researcher
Kolář Radim, doc. Ing., Ph.D. - principal person responsible

Units

Funding resources

Brno University of Technology - Vnitřní projekty VUT

- whole funder (2020-01-01 - 2021-12-31)

Results

BARTOŇ, V.; NYKRÝNOVÁ, M.; ŠKUTKOVÁ, H. Watershed Segmentation for Peak Picking in Mass Spectrometry Data. In Bioinformatics and Biomedical Engineering. Lecture Notes in Computer Science. 2020. p. 494-502. ISBN: 978-3-030-45384-8. ISSN: 0302-9743.
Detail

ENIKEEV, A.; SKOPALÍK, J.; PARÁK, T.; ŠVÍK, K.; ČMIEL, V.; KOLÁŘOVÁ, J.; MAŠEK, J. Smart biometric recording system. In 20th Conference of Czech and Slovak Physicists Proceeding. Slovak Physical Society, Czech Physical Society, 2020. p. 109-110. ISBN: 978-80-89855-13-1.
Detail

NĚMCOVÁ, A.; JORDÁNOVÁ, I.; VAŘEČKA, M.; SMÍŠEK, R.; MARŠÁNOVÁ, L.; SMITAL, L.; VÍTEK, M. Monitoring of heart rate, blood oxygen saturation, and blood pressure using a smartphone. Biomedical Signal Processing and Control, 2020, vol. 59, no. May 2020, p. 1-10. ISSN: 1746-8108.
Detail

MUSILOVÁ, J. HOMOLOGSEARCH: R Package for Identyfying Homologous Sequences between Model and Non-model Organisms. In Proceeding I of the 26th Conference STUDENT EEICT 2020. Brno: Vysoké učení technické v Brně, Fakulta elektrotechniky a komunikačních technologií, 2020. p. 334-338. ISBN: 978-80-214-5867-3.
Detail

NYKRÝNOVÁ, M.; BARTOŇ, V.; BEZDÍČEK, M.; LENGEROVÁ, M.; ŠKUTKOVÁ, H. Detection of Highly Variable Genome Fragments in Unmapped Reads of Escherichia coli Genomes. In Bioinformatics and Biomedical Engineering. Lecture Notes in Computer Science. 2020. p. 569-578. ISBN: 978-3-030-45384-8. ISSN: 0302-9743.
Detail

NYKRÝNOVÁ, M.; BARTOŇ, V.; SEDLÁŘ, K.; BEZDÍČEK, M.; LENGEROVÁ, M.; ŠKUTKOVÁ, H. Word entropy-based approach to detect highly variable genetic markers for bacterial genotyping. Frontiers in Microbiology, 2021, vol. 12, no. 1, p. 1-8. ISSN: 1664-302X.
Detail

NEMČEK, J. Detection of intracranial haemorrhages in head CT data based on deep learning. In Proceedings II of the 26th Conference STUDENT EEICT 2020. Brno: Brno University of Technolog, Faculty of Electrical Engineering anf Communication, 2020. p. 72-75. ISBN: 978-80-214-5868-0.
Detail

SCHWARZEROVÁ, J. Reproducible analytical pipeline for using raw RNA-Seq data from non-model organisms. Proceedings of the 26th Conference STUDENT EEICT 2020. Brno: Vysoké učení technické v Brně, Fakulta elektrotechniky a komunikačních technologií, 2020. p. 225-228. ISBN: 978-80-214-5867-3.
Detail

TORNOW, R.; KOLÁŘ, R.; ODSTRČILÍK, J.; LABOUNKOVÁ, I.; HORN, F. Imaging video plethysmography shows reduced signal amplitude in glaucoma patients in the area of the microvascular tissue of the optic nerve head. GRAEFES ARCHIVE FOR CLINICAL AND EXPERIMENTAL OPHTHALMOLOGY, 2020, no. 1, p. 1-12. ISSN: 0721-832X.
Detail

NĚMCOVÁ, A.; VÍTEK, M.; NOVÁKOVÁ, M. Complex study on compression of ECG signals using novel single-cycle fractal-based algorithm and SPIHT. Scientific Reports, 2020, vol. 10, no. 1, p. 1-15. ISSN: 2045-2322.
Detail

SMITAL, L.; HAIDER, C.; VÍTEK, M.; LEINVEBER, P.; JURÁK, P.; NĚMCOVÁ, A.; SMÍŠEK, R.; MARŠÁNOVÁ, L.; PROVAZNÍK, I.; FELTON, C.; GILBERT, B.; HOLMES, D. Real-Time Quality Assessment of Long-Term ECG Signals Recorded by Wearables in Free-Living Conditions. IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING, 2020, vol. 67, no. 10, p. 2721-2734. ISSN: 1558-2531.
Detail

ONDRUŠ, J.; HUBATKA, F.; KULICH, P.; ODEHNALOVÁ, N.; HARABIŠ, V.; HESKO, B.; SYCHRA, O.; ŠIROKÝ, P.; TURÁNEK, J.; NOVOBILSKÝ, A. A novel approach to imaging engorged ticks: Micro-CT scanning of Ixodes ricinus fed on blood enriched with gold nanoparticles. TICKS TICK-BORNE DIS, 2020, vol. 12, no. 1, p. 1-6. ISSN: 1877-959X.
Detail

VIČAR, T.; HEJČ, J.; NOVOTNÁ, P.; RONZHINA, M.; JANOUŠEK, O. ECG Abnormalities Recognition Using Convolutional Networkwith Global Skip Connections and Custom Loss Function. In Computing in Cardiology 2020. Computers in Cardiology. 47. Rimini, Italy: Computing in Cardiology 2020, 2020. p. 1-4. ISSN: 0276-6574.
Detail

NOVOTNÁ, P.; VIČAR, T.; RONZHINA, M.; HEJČ, J.; KOLÁŘOVÁ, J. Deep-Learning Premature Contraction Localization in 12-lead ECGfrom Whole Signal Annotations. In Computing in Cardiology 2020. Computers in Cardiology. 47. Rimini, Italy: Computing in Cardiology 2020, 2020. p. 1-4. ISSN: 0276-6574.
Detail

PAL, A.; ROY, S.; KUMAR, A.; MAHMOOD, S.; KHODAPANAH, N.; THOMAS, S.; AGATEMOR, C.; GHOSAL, K. Physicochemical Characterization, Molecular Docking, and In Vitro Dissolution of Glimepiride−Captisol Inclusion Complexes. ACS OMEGA, 2020, vol. 5, no. 32, p. 19968-19977. ISSN: 2470-1343.
Detail

VASYLKIVSKA, M.; BRANSKÁ, B.; SEDLÁŘ, K.; JUREČKOVÁ, K.; PROVAZNÍK, I.; PATÁKOVÁ, P. Phenotypic and genomic analysis of Clostridium beijerinckii NRRL B-598 mutants with increased butanol tolerance. Frontiers in Bioengineering and Biotechnology, 2020, vol. 8, no. 1, p. 1-18. ISSN: 2296-4185.
Detail

SMITAL, L.; MARŠÁNOVÁ, L.; SMÍŠEK, R.; NĚMCOVÁ, A.; VÍTEK, M. Robust QRS Detection Using Combination of Three Independent Methods. In Computing in Cardiology 2020. Computing in Cardiology. Rimini, Italy: 2020. p. 1-4. ISSN: 2325-887X.
Detail

REPČÍK, T.; POLÁKOVÁ, V.; WALOSZEK, V.; NOHEL, M.; SMITAL, L.; VÍTEK, M.; KOLÁŘ, R. Biometric Authentication Using the Unique Characteristics of the ECG Signal. In Computing in Cardiology 2020. Computing in Cardiology. Rimini, Italy: 2020. p. 1-4. ISSN: 2325-887X.
Detail

RAJENDRAN, M.; ROY, S.; RAVICHANDRAN, K.; MISHRA, B.; GUPTA, D.; NAGARAJAN, S.; SELVARAJ, R.; PROVAZNÍK, I. In-silico screening and molecular dynamics of phytochemicals from Indian cuisine against SARS-CoV-2 MPro. JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2020, vol. 38, no. 18, p. 1-15. ISSN: 1538-0254.
Detail

MARŠÁNOVÁ, L.; NĚMCOVÁ, A.; SMÍŠEK, R.; SMITAL, L.; VÍTEK, M. Single-Feature Method for Fast Atrial Fibrillation Detection in ECG Signals. In Computing in Cardiology 2020. Computing in Cardiology. Rimini, Italy: 2020. p. 1-4. ISSN: 2325-887X.
Detail

SMÍŠEK, R.; NĚMCOVÁ, A.; MARŠÁNOVÁ, L.; SMITAL, L.; VÍTEK, M.; KOZUMPLÍK, J. Cardiac Pathologies Detection and Classification in 12-lead ECG. In Computing in Cardiology 2020. Computing in Cardiology. Rimini, Italy: 2020. p. 1-4. ISSN: 2325-887X.
Detail

PATÁKOVÁ, P.; KOLEK, J.; JUREČKOVÁ, K.; BRANSKÁ, B.; SEDLÁŘ, K.; VASYLKIVSKA, M.; PROVAZNÍK, I. Deeper below the surface – transcriptional changes of selected Clostridium beijerinckii NRRL B-598 genes induced by butanol shock. MicrobiologyOpen, 2020, vol. 00, no. 0, p. 1-14. ISSN: 2045-8827.
Detail

BRANSKÁ, B.; VASYLKIVSKA, M.; RASCHMANOVÁ, H.; JUREČKOVÁ, K.; SEDLÁŘ, K.; PROVAZNÍK, I.; PATÁKOVÁ, P. Changes in efflux pump activity of Clostridium beijerinckii throughout ABE fermentation. Applied Microbiology and Biotechnology, 2021, vol. 105, no. 1, p. 1-13. ISSN: 1432-0614.
Detail

SKOPALÍK, J.; HORÁK, T.; ČMIEL, V.;PARÁK, T.; PRŮCHA, J.; SVIK, K.; MAŠEK, J. SELECTION OF NANOPRTICLES FOR GENE AND PROTEIN DELIVERY AND QUANTIFICATION OF LASMID/PROTEIN SURFACE ADSORPTION. XX. Workshop of Biophysical Chemists and Electrochemists Book of abstracts. Brno: MUNI Press, 2020. p. 60-61. ISBN: 978-80-210-9655-4.
Detail

BARILÍKOVÁ, L. MY_UMI_TOOL: Processing of Unique Molecular Identifiers without Mapping to a Reference Genome. In PROCEEDINGS II OF THE 26TH CONFERENCE STUDENT EEICT 2020. Brno: Vysoké učení technické v Brně, Fakulta elektrotechniky a komunikačních technologií, 2020. p. 76-79. ISBN: 978-80-214-5868-0.
Detail

MARŠÁLOVÁ, K.; SCHWARZ, D.; PROVAZNÍK, I. Classification of First-Episode Schizophrenia Using Wavelet Imaging Features. In Digital Personalized Health and Medicine. Studies in Health Technology and Informatics. Geneve: IOS Press, 2020. p. 1221-1222. ISBN: 978-1-64368-083-5.
Detail

NOVOTNÁ, P.: Generátor šumu; Software pro generování šumu v 1D signálech. Ústav biomedicínského inženýrství, Fakulta elektrotechniky a komunikačních technologií, VUT v Brně, Technická 12, Brno 61600. URL: https://github.com/PetraNovotna/generator_sumu. (software)
Detail

JAKUBÍČEK, R.; VIČAR, T.; CHMELÍK, J.: CTDeepRot; CTDeepRot. Ústav biomedicínského inženýrství Vysoké učení technické v Brně Technická 12 616 00 Brno Česká republika +web GitHub. URL: https://github.com/JakubicekRoman/CTDeepRot. (software)
Detail