Publication detail

Cross-Correlation Based Detection of Contigs Overlaps

JUGAS, R. VÍTEK, M. SEDLÁŘ, K. ŠKUTKOVÁ, H.

Original Title

Cross-Correlation Based Detection of Contigs Overlaps

English Title

Cross-Correlation Based Detection of Contigs Overlaps

Type

conference paper

Language

en

Original Abstract

The current methods use string algorithms based on dynamic programming computing with characters (A, C, G, T) representing nucleotides, but if applied to long sequences, e.g. contigs, they tend to be time-consuming. We applied another approach based on genomic signal processing to evaluate the further merging and overlaps between the contigs.

English abstract

The current methods use string algorithms based on dynamic programming computing with characters (A, C, G, T) representing nucleotides, but if applied to long sequences, e.g. contigs, they tend to be time-consuming. We applied another approach based on genomic signal processing to evaluate the further merging and overlaps between the contigs.

Keywords

bioinformatics; genomic signal processing;assembly; correlation

Released

25.05.2018

Publisher

MIPRO Croatian Society

Location

Croatia, Rijeka, Kružna 8/II

ISBN

978-953-233-096-0

Book

MIPRO 2018 proceedings

Pages from

177

Pages to

188

Pages count

1903

BibTex


@inproceedings{BUT149580,
  author="Robin {Jugas} and Martin {Vítek} and Karel {Sedlář} and Helena {Škutková}",
  title="Cross-Correlation Based Detection of Contigs Overlaps",
  annote="The current methods use string algorithms based on dynamic
programming computing with characters (A, C, G, T)
representing nucleotides, but if applied to long sequences, e.g.
contigs, they tend to be time-consuming. We applied another
approach based on genomic signal processing to evaluate the
further merging and overlaps between the contigs.",
  address="MIPRO Croatian Society",
  booktitle="MIPRO 2018 proceedings",
  chapter="149580",
  doi="10.23919/MIPRO.2018.8400030",
  howpublished="electronic, physical medium",
  institution="MIPRO Croatian Society",
  number="1",
  year="2018",
  month="may",
  pages="177--188",
  publisher="MIPRO Croatian Society",
  type="conference paper"
}