Detail publikace

Detection of Short Exons in DNA Sequences Using Complex Wavelet Transform of Structural Features

Originální název

Detection of Short Exons in DNA Sequences Using Complex Wavelet Transform of Structural Features

Anglický název

Detection of Short Exons in DNA Sequences Using Complex Wavelet Transform of Structural Features

Jazyk

en

Originální abstrakt

The paper presents a novel improvement of a spectral method used for detection of short coding regions in genes. The complex representation of four nucleotides involving three basic chemical and structural properties is used for conversion of a symbolic sequence into a genomic signal. Another genomic signal is generated from dinucleotide propeller twist. Filtered complex combination of both signals is transformed by a complex continuous wavelet transform. Its results were analysed both in amplitude and phase parts. Experimental results obtained by this method are shown to be comparable or better than recently published methods based on the selected set of genes.

Anglický abstrakt

The paper presents a novel improvement of a spectral method used for detection of short coding regions in genes. The complex representation of four nucleotides involving three basic chemical and structural properties is used for conversion of a symbolic sequence into a genomic signal. Another genomic signal is generated from dinucleotide propeller twist. Filtered complex combination of both signals is transformed by a complex continuous wavelet transform. Its results were analysed both in amplitude and phase parts. Experimental results obtained by this method are shown to be comparable or better than recently published methods based on the selected set of genes.

BibTex


@inproceedings{BUT94918,
  author="Ivo {Provazník} and Vladimíra {Kubicová} and Helena {Škutková} and Jiří {Nedvěd} and Ewaryst {Tkacz} and Petr {Babula} and René {Kizek}",
  title="Detection of Short Exons in DNA Sequences Using Complex Wavelet Transform of Structural Features",
  annote="The paper presents a novel improvement of a spectral method used for detection of short coding regions in genes. The complex representation of four nucleotides involving three basic chemical and structural properties is used for conversion of a symbolic sequence into a genomic signal. Another genomic signal is generated from dinucleotide propeller twist. Filtered complex combination of both signals is transformed by a complex continuous wavelet transform. Its results were analysed both in amplitude and phase parts. Experimental results obtained by this method are shown to be comparable or better than recently published methods based on the selected set of genes.",
  booktitle="Proceedings of IEEE International Workshop on Genomic Signal Processing and Statistics 2012",
  chapter="94918",
  howpublished="print",
  year="2012",
  month="november",
  pages="1--4",
  type="conference paper"
}