Detail publikace

Similarity/Dissimilarity Analysis of COI Mitochondrial Gene of Chosen Bird Species Based on Nucleotide Density

Originální název

Similarity/Dissimilarity Analysis of COI Mitochondrial Gene of Chosen Bird Species Based on Nucleotide Density

Anglický název

Similarity/Dissimilarity Analysis of COI Mitochondrial Gene of Chosen Bird Species Based on Nucleotide Density

Jazyk

en

Originální abstrakt

Mitochondrial cytochrome c oxidase I (COI) genes may be used for DNA barcoding. It allows quick species identification of unknown sample. Intent of DNA barcoding is identification of new and closely related species. We report similarity/dissimilarity analysis of COI mitochondrial gene sequences of seventeen species of birds of prey. Their DNA sequences were represented in numerical form based on nucleotide densities. The similarity/dissimilarity analysis was based on evaluation of Euclidean distances between sequences. Results of similarity/dissimilarity analysis of sequences in numerical representation were also compared with phylogenetic three based on Jukes-Cantor method.

Anglický abstrakt

Mitochondrial cytochrome c oxidase I (COI) genes may be used for DNA barcoding. It allows quick species identification of unknown sample. Intent of DNA barcoding is identification of new and closely related species. We report similarity/dissimilarity analysis of COI mitochondrial gene sequences of seventeen species of birds of prey. Their DNA sequences were represented in numerical form based on nucleotide densities. The similarity/dissimilarity analysis was based on evaluation of Euclidean distances between sequences. Results of similarity/dissimilarity analysis of sequences in numerical representation were also compared with phylogenetic three based on Jukes-Cantor method.

BibTex


@inproceedings{BUT24190,
  author="Denisa {Maděránková} and Ivo {Provazník}",
  title="Similarity/Dissimilarity Analysis of COI Mitochondrial Gene of Chosen Bird Species Based on Nucleotide Density",
  annote="Mitochondrial cytochrome c oxidase I (COI) genes may be used for DNA barcoding. It allows quick species identification of unknown sample. Intent of DNA barcoding is identification of new and closely related species. We report similarity/dissimilarity analysis of COI mitochondrial gene sequences of seventeen species of birds of prey. Their DNA sequences were represented in numerical form based on nucleotide densities. The similarity/dissimilarity analysis was based on evaluation of Euclidean distances between sequences. Results of similarity/dissimilarity analysis of sequences in numerical representation were also compared with phylogenetic three based on Jukes-Cantor method.",
  address="IEEE",
  booktitle="10th International Conference on Information Technology and Application in Biomedicine",
  chapter="24190",
  howpublished="electronic, physical medium",
  institution="IEEE",
  year="2010",
  month="november",
  pages="1--4",
  publisher="IEEE",
  type="conference paper"
}