Detail publikace

Determination of relationship among mycoplasmas based on RGB and non-RGB spectrogram analysis

KUBICOVÁ, V. PROVAZNÍK, I.

Originální název

Determination of relationship among mycoplasmas based on RGB and non-RGB spectrogram analysis

Český název

Determination of relationship among mycoplasmas based on RGB and non-RGB spectrogram analysis

Anglický název

Determination of relationship among mycoplasmas based on RGB and non-RGB spectrogram analysis

Typ

článek ve sborníku

Jazyk

en

Originální abstrakt

The study of evolutionary relationships among groups of organisms is nowadays based on comparison of particular genes or families of genes. We suggest comparing information in whole genome for determination of similarity among organisms. In the present work, the RGB and non-RGB spectrogram analysis is discussed as a tool for determination of relationship among mycoplasmas. Spectrograms of four whole Mycoplasma genomes are constructed and significant features are extracted. We have included occurrence and position of tandem and dispread repetitive stretches and occurrence and position of large noncoding parts to the group of significant features. Based on this method, we have stated the relationship among four Mycoplasmas and our results were compared with a phylogenetic tree constructed by a hidden Markov model from sequences of proteins of known structure as presented in literature.

Český abstrakt

The study of evolutionary relationships among groups of organisms is nowadays based on comparison of particular genes or families of genes. We suggest comparing information in whole genome for determination of similarity among organisms. In the present work, the RGB and non-RGB spectrogram analysis is discussed as a tool for determination of relationship among mycoplasmas. Spectrograms of four whole Mycoplasma genomes are constructed and significant features are extracted. We have included occurrence and position of tandem and dispread repetitive stretches and occurrence and position of large noncoding parts to the group of significant features. Based on this method, we have stated the relationship among four Mycoplasmas and our results were compared with a phylogenetic tree constructed by a hidden Markov model from sequences of proteins of known structure as presented in literature.

Anglický abstrakt

The study of evolutionary relationships among groups of organisms is nowadays based on comparison of particular genes or families of genes. We suggest comparing information in whole genome for determination of similarity among organisms. In the present work, the RGB and non-RGB spectrogram analysis is discussed as a tool for determination of relationship among mycoplasmas. Spectrograms of four whole Mycoplasma genomes are constructed and significant features are extracted. We have included occurrence and position of tandem and dispread repetitive stretches and occurrence and position of large noncoding parts to the group of significant features. Based on this method, we have stated the relationship among four Mycoplasmas and our results were compared with a phylogenetic tree constructed by a hidden Markov model from sequences of proteins of known structure as presented in literature.

Klíčová slova

RGB spectrogram, AR model DNA, DFT

Rok RIV

2012

Vydáno

14.07.2012

Místo

Řecko

ISBN

978-618-5009-04-5

Kniha

PROCEEDINGS of the 10th International Conference on INFORMATION COMMUNICATION TECHNOLOGIES IN HEALTH

Strany od

299

Strany do

305

Strany počet

7

BibTex


@inproceedings{BUT93137,
  author="Vladimíra {Kubicová} and Ivo {Provazník}",
  title="Determination of relationship among mycoplasmas based on RGB and non-RGB spectrogram analysis",
  annote="The study of evolutionary relationships among groups of organisms is nowadays based on comparison of particular genes or families of genes. We suggest comparing information in whole genome for determination of similarity among organisms. In the present work, the RGB and non-RGB spectrogram analysis is discussed as a tool for determination of relationship among mycoplasmas. Spectrograms of four whole Mycoplasma genomes are constructed and significant features are extracted. We have included occurrence and position of tandem and dispread repetitive stretches and occurrence and position of large noncoding parts to the group of significant features. Based on this method, we have stated the relationship among four Mycoplasmas and our results were compared with a phylogenetic tree constructed by a hidden Markov model from sequences of proteins of known structure as presented in literature.",
  booktitle="PROCEEDINGS of the 10th International Conference on INFORMATION COMMUNICATION TECHNOLOGIES IN HEALTH",
  chapter="93137",
  howpublished="electronic, physical medium",
  year="2012",
  month="july",
  pages="299--305",
  type="conference paper"
}