Detail publikace

A flexible technique for the automatic design of approximate string matching architectures

MARTÍNEK, T. LEXA, M. KOŘENEK, J. FUČÍK, O.

Originální název

A flexible technique for the automatic design of approximate string matching architectures

Typ

článek ve sborníku ve WoS nebo Scopus

Jazyk

angličtina

Originální abstrakt

Systolic array architectures for approximate string matching play a significant role as hardware accelerators in biological applications. However, their wider use is limited by the lack of flexibility required by often variable tasks. In this respect, it is desirable to develop a procedure for automatic design and implementation of such accelerators to reach high performance and efficiency with as little human effort on the side of the designer as possible. This paper proposes the essential element of such procedure, a method for the calculation of generic systolic array parameters with respect to maximal performance and efficient resource utilization.

Klíčová slova

Appriximate string matching, Systolic array architecture, FPGA, DNA sequence analysis

Autoři

MARTÍNEK, T.; LEXA, M.; KOŘENEK, J.; FUČÍK, O.

Rok RIV

2006

Vydáno

26. 4. 2006

Nakladatel

IEEE Computer Society

Místo

Praha

ISBN

1-4244-0184-4

Kniha

Proc. of 2006 IEEE Design and Diagnostics of Electronic Circuits and Systems Workshop

Strany od

83

Strany do

84

Strany počet

2

BibTex

@inproceedings{BUT22395,
  author="Tomáš {Martínek} and Matej {Lexa} and Jan {Kořenek} and Otto {Fučík}",
  title="A flexible technique for the automatic design of approximate string matching architectures",
  booktitle="Proc. of 2006 IEEE Design and Diagnostics of Electronic Circuits and Systems Workshop",
  year="2006",
  pages="83--84",
  publisher="IEEE Computer Society",
  address="Praha",
  isbn="1-4244-0184-4"
}