Detail publikace

Classification of genomic signals using dynamic time warping

Originální název

Classification of genomic signals using dynamic time warping

Anglický název

Classification of genomic signals using dynamic time warping

Jazyk

en

Originální abstrakt

Classification methods of DNA most commonly use comparison of the differences in DNA symbolic records, which requires the global multiple sequence alignment. This solution is often inappropriate, causing a number of imprecisions and requires additional user intervention for exact alignment of the similar segments. The similar segments in DNA represented as a signal are characterized by a similar shape of the curve. The DNA alignment in genomic signals may adjust whole sections not only individual symbols. The dynamic time warping (DTW) is suitable for this purpose and can replace the multiple alignment of symbolic sequences in applications, such as phylogenetic analysis.

Anglický abstrakt

Classification methods of DNA most commonly use comparison of the differences in DNA symbolic records, which requires the global multiple sequence alignment. This solution is often inappropriate, causing a number of imprecisions and requires additional user intervention for exact alignment of the similar segments. The similar segments in DNA represented as a signal are characterized by a similar shape of the curve. The DNA alignment in genomic signals may adjust whole sections not only individual symbols. The dynamic time warping (DTW) is suitable for this purpose and can replace the multiple alignment of symbolic sequences in applications, such as phylogenetic analysis.

BibTex


@article{BUT101854,
  author="Helena {Škutková} and Martin {Vítek} and Petr {Babula} and René {Kizek} and Ivo {Provazník}",
  title="Classification of genomic signals using dynamic time warping",
  annote="Classification methods of DNA most commonly use comparison of the differences in DNA symbolic records, which requires the global multiple sequence alignment. This solution is often inappropriate, causing a number of imprecisions and requires additional user intervention for exact alignment of the similar segments. The similar segments in DNA represented as a signal are characterized by a similar shape of the curve. The DNA alignment in genomic signals may adjust whole sections not only individual symbols. The dynamic time warping (DTW) is suitable for this purpose and can replace the multiple alignment of symbolic sequences in applications, such as phylogenetic analysis.",
  address="BIOMED CENTRAL LTD",
  chapter="101854",
  doi="10.1186/1471-2105-14-S10-S1",
  howpublished="online",
  institution="BIOMED CENTRAL LTD",
  number="10",
  volume="14",
  year="2013",
  month="august",
  pages="1--7",
  publisher="BIOMED CENTRAL LTD",
  type="journal article"
}