Detail publikace

Compressed DNA signal representation for classification of long sequences

Originální název

Compressed DNA signal representation for classification of long sequences

Anglický název

Compressed DNA signal representation for classification of long sequences

Jazyk

en

Originální abstrakt

The whole genome sequencing became standard part of nucleic acids' research due to the development of next-generation sequencing platforms. However, an algorithmic processing of long sequences is computationally demanding. We present a new method for lossy compression of DNA in a form of cumulative phase signals. This compression is convenient for comparison of various sequences in short time.

Anglický abstrakt

The whole genome sequencing became standard part of nucleic acids' research due to the development of next-generation sequencing platforms. However, an algorithmic processing of long sequences is computationally demanding. We present a new method for lossy compression of DNA in a form of cumulative phase signals. This compression is convenient for comparison of various sequences in short time.

BibTex


@inproceedings{BUT101200,
  author="Karel {Sedlář} and Helena {Škutková} and Ivo {Provazník}",
  title="Compressed DNA signal representation for classification of long sequences",
  annote="The whole genome sequencing became standard part of nucleic acids' research due to the development of next-generation sequencing platforms. However, an algorithmic processing of long sequences is computationally demanding. We present a new method for lossy compression of DNA in a form of cumulative phase signals. This compression is convenient for comparison of various sequences in short time.",
  address="LITERA BRNO",
  booktitle="XIII pracovní setkání fyzikálních chemiků a elektrochemiků",
  chapter="101200",
  edition="1.",
  howpublished="print",
  institution="LITERA BRNO",
  year="2013",
  month="may",
  pages="135--136",
  publisher="LITERA BRNO",
  type="conference paper"
}