Detail publikace

Comparison of Spectrogram Construction Methods for Detection of Periodicities in DNA Sequences

KUBICOVÁ, V. PROVAZNÍK, I.

Originální název

Comparison of Spectrogram Construction Methods for Detection of Periodicities in DNA Sequences

Typ

abstrakt

Jazyk

angličtina

Originální abstrakt

The choice of method for constructing DNA spectrogram affects the properties of the resulting spectrogram. In our work we have studied the properties of the spectrogram calculated in three ways: by Fourier transform of numerically represented DNA sequence, by Fourier transform of the autocorrelation function and by AR model. The main objective was to determine which method is suitable for detecting regions with a periodicity of 3 bp, tandem repeats and CpG islands. The choice of method of construction spectrogram is very important for subsequent automatic detection of areas of interest in spectrogram.

Klíčová slova

DNA spectrogram, Fourier transform, AR model, Autocorrelation function, Tandem repetitions, CpG islands, Coding egions

Autoři

KUBICOVÁ, V.; PROVAZNÍK, I.

Vydáno

10. 4. 2013

Nakladatel

MUNI Press

Místo

Brno

ISBN

978-80-210-6200-9

Kniha

The Students Scientific Conference on Biotechnology and Biomedicine 2013: Conference Book

Edice

1.

Číslo edice

1.

Strany od

78

Strany do

78

Strany počet

1

BibTex

@misc{BUT99151,
  author="Vladimíra {Kubicová} and Valentine {Provazník}",
  title="Comparison of Spectrogram Construction Methods for Detection of Periodicities in DNA Sequences",
  booktitle="The Students Scientific Conference on Biotechnology and Biomedicine 2013: Conference Book",
  year="2013",
  series="1.",
  edition="1.",
  pages="78--78",
  publisher="MUNI Press",
  address="Brno",
  isbn="978-80-210-6200-9",
  note="abstract"
}