Detail publikace

Comparison of Spectrogram Construction Methods for Detection of Periodicities in DNA Sequences

Originální název

Comparison of Spectrogram Construction Methods for Detection of Periodicities in DNA Sequences

Anglický název

Comparison of Spectrogram Construction Methods for Detection of Periodicities in DNA Sequences

Jazyk

en

Originální abstrakt

The choice of method for constructing DNA spectrogram affects the properties of the resulting spectrogram. In our work we have studied the properties of the spectrogram calculated in three ways: by Fourier transform of numerically represented DNA sequence, by Fourier transform of the autocorrelation function and by AR model. The main objective was to determine which method is suitable for detecting regions with a periodicity of 3 bp, tandem repeats and CpG islands. The choice of method of construction spectrogram is very important for subsequent automatic detection of areas of interest in spectrogram.

Anglický abstrakt

The choice of method for constructing DNA spectrogram affects the properties of the resulting spectrogram. In our work we have studied the properties of the spectrogram calculated in three ways: by Fourier transform of numerically represented DNA sequence, by Fourier transform of the autocorrelation function and by AR model. The main objective was to determine which method is suitable for detecting regions with a periodicity of 3 bp, tandem repeats and CpG islands. The choice of method of construction spectrogram is very important for subsequent automatic detection of areas of interest in spectrogram.

BibTex


@misc{BUT99151,
  author="Vladimíra {Kubicová} and Ivo {Provazník}",
  title="Comparison of Spectrogram Construction Methods for Detection of Periodicities in DNA Sequences",
  annote="The choice of method for constructing DNA spectrogram affects the properties of the resulting spectrogram. In our work we have studied the properties of the spectrogram calculated in three ways: by Fourier transform of numerically represented DNA sequence, by Fourier transform of the autocorrelation function and by AR model. The main objective was to determine which method is suitable for detecting regions with a periodicity of 3 bp, tandem repeats and CpG islands. The choice of method of construction spectrogram is very important for subsequent automatic detection of areas of interest in spectrogram.",
  address="MUNI Press",
  booktitle="The Students Scientific Conference on Biotechnology and Biomedicine 2013: Conference Book",
  chapter="99151",
  edition="1.",
  howpublished="print",
  institution="MUNI Press",
  year="2013",
  month="april",
  pages="78--78",
  publisher="MUNI Press",
  type="abstract"
}