Detail publikace

Detection of Short Exons in DNA Sequences Using Complex Wavelet Transform of Structural Features

PROVAZNÍK, I. KUBICOVÁ, V. ŠKUTKOVÁ, H. NEDVĚD, J. TKACZ, E. BABULA, P. KIZEK, R.

Originální název

Detection of Short Exons in DNA Sequences Using Complex Wavelet Transform of Structural Features

Český název

Detection of Short Exons in DNA Sequences Using Complex Wavelet Transform of Structural Features

Anglický název

Detection of Short Exons in DNA Sequences Using Complex Wavelet Transform of Structural Features

Typ

článek ve sborníku

Jazyk

en

Originální abstrakt

The paper presents a novel improvement of a spectral method used for detection of short coding regions in genes. The complex representation of four nucleotides involving three basic chemical and structural properties is used for conversion of a symbolic sequence into a genomic signal. Another genomic signal is generated from dinucleotide propeller twist. Filtered complex combination of both signals is transformed by a complex continuous wavelet transform. Its results were analysed both in amplitude and phase parts. Experimental results obtained by this method are shown to be comparable or better than recently published methods based on the selected set of genes.

Český abstrakt

The paper presents a novel improvement of a spectral method used for detection of short coding regions in genes. The complex representation of four nucleotides involving three basic chemical and structural properties is used for conversion of a symbolic sequence into a genomic signal. Another genomic signal is generated from dinucleotide propeller twist. Filtered complex combination of both signals is transformed by a complex continuous wavelet transform. Its results were analysed both in amplitude and phase parts. Experimental results obtained by this method are shown to be comparable or better than recently published methods based on the selected set of genes.

Anglický abstrakt

The paper presents a novel improvement of a spectral method used for detection of short coding regions in genes. The complex representation of four nucleotides involving three basic chemical and structural properties is used for conversion of a symbolic sequence into a genomic signal. Another genomic signal is generated from dinucleotide propeller twist. Filtered complex combination of both signals is transformed by a complex continuous wavelet transform. Its results were analysed both in amplitude and phase parts. Experimental results obtained by this method are shown to be comparable or better than recently published methods based on the selected set of genes.

Klíčová slova

Exon detection, DNA structure, wavelet analysis, DNA sequence analysis

Rok RIV

2012

Vydáno

05.11.2012

ISBN

978-1-4673-0491-7

Kniha

Proceedings of IEEE International Workshop on Genomic Signal Processing and Statistics 2012

Strany od

1

Strany do

4

Strany počet

4

BibTex


@inproceedings{BUT94918,
  author="Ivo {Provazník} and Vladimíra {Kubicová} and Helena {Škutková} and Jiří {Nedvěd} and Ewaryst {Tkacz} and Petr {Babula} and René {Kizek}",
  title="Detection of Short Exons in DNA Sequences Using Complex Wavelet Transform of Structural Features",
  annote="The paper presents a novel improvement of a spectral method used for detection of short coding regions in genes. The complex representation of four nucleotides involving three basic chemical and structural properties is used for conversion of a symbolic sequence into a genomic signal. Another genomic signal is generated from dinucleotide propeller twist. Filtered complex combination of both signals is transformed by a complex continuous wavelet transform. Its results were analysed both in amplitude and phase parts. Experimental results obtained by this method are shown to be comparable or better than recently published methods based on the selected set of genes.",
  booktitle="Proceedings of IEEE International Workshop on Genomic Signal Processing and Statistics 2012",
  chapter="94918",
  howpublished="print",
  year="2012",
  month="november",
  pages="1--4",
  type="conference paper"
}