Detail publikace

Clustering of Protein Substructures for Discovery of a Novel Class of Sequence-Structure Fragments

Originální název

Clustering of Protein Substructures for Discovery of a Novel Class of Sequence-Structure Fragments

Anglický název

Clustering of Protein Substructures for Discovery of a Novel Class of Sequence-Structure Fragments

Jazyk

en

Originální abstrakt

In this paper, we propose a novel method for clustering of protein substructures that we developed to study the relationships between protein sequences and their corresponding structures. We show the results of the comparison to other commonly used methods for clustering of protein structures. Finally, we outline a procedure for finding sequence profiles that tend to occur in more than one structural conformation but the number of their structural conformations is limited. This procedure is based on our method for protein substructure clustering.

Anglický abstrakt

In this paper, we propose a novel method for clustering of protein substructures that we developed to study the relationships between protein sequences and their corresponding structures. We show the results of the comparison to other commonly used methods for clustering of protein structures. Finally, we outline a procedure for finding sequence profiles that tend to occur in more than one structural conformation but the number of their structural conformations is limited. This procedure is based on our method for protein substructure clustering.

BibTex


@inproceedings{BUT35834,
  author="Ivana {Burgetová} and Jaroslav {Zendulka} and Matej {Lexa}",
  title="Clustering of Protein Substructures for Discovery of a Novel Class of Sequence-Structure Fragments",
  annote="In this paper, we propose a novel method for clustering of protein substructures
that we developed to study the relationships between protein sequences and their
corresponding structures. We show the results of the comparison to other commonly
used methods for clustering of protein structures. Finally, we outline
a procedure for finding sequence profiles that tend to occur in more than one
structural conformation but the number of their structural conformations is
limited. This procedure is based on our method for protein substructure
clustering.",
  address="Springer Verlag",
  booktitle="Information Technology in Bio- and Medical Informatics, ITBAM 2010",
  chapter="35834",
  doi="10.1007/978-3-642-15020-3_9",
  edition="Lecture Notes in Computer Science",
  howpublished="print",
  institution="Springer Verlag",
  year="2010",
  month="september",
  pages="94--101",
  publisher="Springer Verlag",
  type="conference paper"
}