doc. Ing.

Jiří Jaroš

Ph.D.

FIT, UPSY – docent

+420 54114 1207
jarosjir@fit.vutbr.cz

Odeslat VUT zprávu

doc. Ing. Jiří Jaroš, Ph.D.

Publikace

  • 2020

    KUKLIŠ, F.; JAROŠ, M.; JAROŠ, J. Accelerated Design of HIFU Treatment Plans Using Island-based Evolutionary Strategy. In Applications ofEvolutionary Computation. LNCS 12104. Cham: Springer International Publishing, 2020. s. 463-478. ISBN: 978-3-030-43721-3.
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    JAROŠ, M.; TREEBY, B.; JAROŠ, J. k-Dispatch: A Management System for Biomedical Ultrasound Workflows in Personalized Medicine. In 2020. s. 0-0.
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    MARTIN, E.; JAROŠ, J.; TREEBY, B. Experimental Validation of k-Wave: Nonlinear Wave Propagation in Layered, Absorbing Fluid Media. IEEE TRANSACTIONS ON ULTRASONICS FERROELECTRICS AND FREQUENCY CONTROL, 2020, roč. 67, č. 1, s. 81-91. ISSN: 1525-8955.
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  • 2019

    WISE, E.; COX, B.; JAROŠ, J.; TREEBY, B. Representing arbitrary acoustic source and sensor distributions in Fourier collocation methods. Journal of the Acoustical Society of America, 2019, roč. 146, č. 1, s. 278-288. ISSN: 1520-8524.
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    JAROŠ, M.; TREEBY, B.; JAROŠ, J. Scientific workflow management framework. Soláň: 2019. s. 1 (1 s.).
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    VAVERKA, F.; TREEBY, B.; JAROŠ, J. Evaluation of the Suitability of Intel Xeon Phi Clusters for the Simulation of Ultrasound Wave Propagation using Pseudospectral Methods. In 19th International Conference on Computational Science 2019, Faro, Portugal, June 12-14, 2019. Lecture Notes in Computer Science. Faro: Springer International Publishing, 2019. s. 577-590. ISBN: 978-3-030-22743-2.
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    TREEBY, B.; JAROŠ, J.; MARTIN, E.; COX, B. From Biology to Bytes: Predicting the Path of Ultrasound Waves Through the Human Body. Acoustics Today, 2019, roč. 15, č. 2, s. 36-44. ISSN: 1557-0223.
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    JAROŠ, M.; JAROŠ, J.; TREEBY, B. Adaptive Execution Planning in Workflow Management Systems. Denver: 2019. s. 0-0.
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    JAROŠ, M.; TREEBY, B.; JAROŠ, J. Adaptive Execution Planning in Biomedical Workflow Management Systems. Ostrava: 2019. s. 0-0.
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    VAVERKA, F.; TREEBY, B.; JAROŠ, J. Advancements in Ultrasound Simulations Enabled by High-bandwidth GPU Interconnects. Denver: 2019. s. 0-0.
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    BORDOVSKÝ, G.; JAROŠ, J. On the Complexity of Photoacoustic Tomography: A Trade-off Between Image Quality and Computational Cost. Solaň: 2019. s. 1 (1 s.).
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  • 2018

    KADLUBIAK, K.; JAROŠ, J.; TREEBY, B. GPU-accelerated Simulation of Elastic Wave Propagation. In The 2018 International Conference on High Performance Computing & Simulation (HPCS 2018). Orleans: IEEE Computer Society, 2018. s. 188-195. ISBN: 978-1-5386-7879-4.
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    TREEBY, B.; VAVERKA, F.; JAROŠ, J. Performance and Accuracy Analysis of Nonlinear k-Wave Simulations Using Local Domain Decomposition with an 8-GPU Server. Proceedings of Meetings on Acoustics, 2018, roč. 34, č. 022002, s. 1-5. ISSN: 1939-800X.
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    SUOMI, V.; TREEBY, B.; JAROŠ, J.; MAKELA, P.; ANTTINEN, M.; SAUNAVAARA, J.; SAINIO, T.; KIVINIEMI, A.; BLANCO, R. Transurethral ultrasound therapy of the prostate in the presence of calcifications: a simulation study. MEDICAL PHYSICS, 2018, roč. 45, č. 11, s. 4793-4804. ISSN: 0094-2405.
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    JAROŠ, M.; TREEBY, B.; JAROŠ, J. Design of HIFU Treatment Plans using Evolutionary Strategy. In GECCO'18 Companion: Genetic and Evolutionary Computation Conference Companion. Kyoto: Association for Computing Machinery, 2018. s. 1568-1575. ISBN: 978-1-4503-5764-7.
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    KLEPÁRNÍK, P.; BAŘINA, D.; ZEMČÍK, P.; JAROŠ, J. Efficient Low-Resource Compression of HIFU Data. Information (Switzerland), 2018, roč. 9, č. 7, s. 1-14. ISSN: 2078-2489.
    Detail | WWW | Plný text v Digitální knihovně

    SUOMI, V.; TREEBY, B.; JAROŠ, J.; SAUNAVAARA, J.; KIVINIEMI, A.; BLANCO, R. The Effect of Tissue Physiological Variablity on Transurethral Ultrasound Therapy of the Prostate. In Proceedings of 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC). Honolulu, HI: Institute of Electrical and Electronics Engineers, 2018. s. 5701-5704. ISBN: 978-1-5386-3646-6.
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    TREEBY, B.; BUDISKÝ, J.; WISE, E.; JAROŠ, J.; COX, B. Rapid calculation of acoustic fields from arbitrary continuous-wave sources. Journal of the Acoustical Society of America, 2018, roč. 2018, č. 143, s. 529-537. ISSN: 1520-8524.
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    SUOMI, V.; JAROŠ, J.; TREEBY, B.; CLEVELAND, R. Full modelling of high-intensity focused ultrasound and thermal heating in the kidney of realistic patient models. IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING, 2018, roč. 65, č. 11, s. 2660-2670. ISSN: 0018-9294.
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  • 2017

    NIKL, V.; HRADECKÝ, M.; JAROŠ, J.; KELEČÉNI, J. The investigation of the ARMv7 and Intel Haswell architectures suitability for performance and energy-aware computing. In High Performance Computing. Lecture Notes in Computer Science. Cham: Springer International Publishing, 2017. s. 377-393. ISBN: 978-3-319-58667-0.
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    AHMED, H.; SHAH, T.; GEORGIOU, P.; JAROŠ, J.; PAYNE, H.; ALLEN, C.; GIBSON, E.; BARRATT, D.; TREEBY, B. Beam Distortion Due to Gold Fiducial Markers During Salvage High-Intensity Focused Ultrasound in the Prostate. MEDICAL PHYSICS, 2017, roč. 44, č. 2, s. 679-693. ISSN: 0094-2405.
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    KLEPÁRNÍK, P.; ZEMČÍK, P.; JAROŠ, J. Efficient Lossy Compression of Ultrasound Data. In 2017 IEEE International Symposium on Signal Processing and Information Technology (ISSPIT). Bilbao: Institute of Electrical and Electronics Engineers, 2017. s. 232-237. ISBN: 978-1-5386-4662-5.
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    ROBERTSON, J.; COX, B.; JAROŠ, J.; TREEBY, B. Accurate simulation of transcranial ultrasound propagation for ultrasonic neuromodulation and stimulation. Journal of the Acoustical Society of America, 2017, roč. 141, č. 3, s. 1726-1738. ISSN: 1520-8524.
    Detail | WWW | Plný text v Digitální knihovně

  • 2016

    BREITENBACHER, D.; HOMOLIAK, I.; JAROŠ, J.; HANÁČEK, P. Impact of Optimization and Parallelism on Factorization Speed of SIQS. In Proceedings of The 20th World Multi-Conference on Systemics, Cybernetics and Informatics. Journal on Systemics, Cybernetics and Informatics. Volume I. Orlando: The International Institute of Informatics and Systemics, 2016. s. 51-58. ISBN: 978-1-941763-41-4. ISSN: 1690-4524.
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    MERTA, M.; ZAPLETAL, J.; JAROŠ, J. Many Core Acceleration of the Boundary Element Method. In Proceedings of High Performance Computing in Science and Engineering. Lecture Notes in Computer Science. Basel: Springer International Publishing, 2016. s. 116-125. ISBN: 978-3-319-40360-1.
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    JAROŠ, J.; VAVERKA, F.; TREEBY, B. Spectral Domain Decomposition Using Local Fourier Basis: Application to Ultrasound Simulation on a Cluster of GPUs. International Journal of Supercomputing Frontiers and Innovations, 2016, roč. 3, č. 3, s. 39-54. ISSN: 2313-8734.
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    BREITENBACHER, D.; HOMOLIAK, I.; JAROŠ, J.; HANÁČEK, P. Impact of Optimization and Parallelism on Factorization Speed of SIQS. Journal on Systemics, Cybernetics and Informatics, 2016, roč. 14, č. 3, s. 51-58. ISSN: 1690-4524.
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    SUOMI, V.; JAROŠ, J.; TREEBY, B.; CLEVELAND, R. Nonlinear 3-D simulation of high-intensity focused ultrasound therapy in the kidney. In 38th Annual International Conference of the IEEE-Engineering-in-Medicine-and-Biology-Society (EMBC). IEEE Engineering in Medicine and Biology Society Conference Proceedings. Orlando: Institute of Electrical and Electronics Engineers, 2016. s. 5648-5651. ISBN: 978-1-4577-0220-4.
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    JAROŠ, J.; RENDELL, A.; TREEBY, B. Full-wave nonlinear ultrasound simulation on distributed clusters with applications in high-intensity focused ultrasound. International Journal of High Performance Computing Applications, 2016, roč. 2016, č. 2, s. 137-155. ISSN: 1741-2846.
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    TREEBY, B.; JAROŠ, J.; COX, B. Advanced photoacoustic image reconstruction using the k-Wave toolbox. In Proceedings of SPIE. Proceedings of SPIE. San Francisco: SPIE - the international society for optics and photonics, 2016. s. 1-14. ISBN: 978-1-62841-942-9.
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    BROWN, M.; JAROŠ, J.; COX, B.; TREEBY, B. Control of Broadband Optically Generated Ultrasound Pulses Using Binary Amplitude Holograms. Journal of the Acoustical Society of America, 2016, roč. 139, č. 4, s. 1637-1647. ISSN: 1520-8524.
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  • 2015

    JAROŠ, J.; MAREK, J.; MENŠÍK, P. Optimisation of Water Management Systems Using a GPU-Accelerated Differential Evolution. In Proceedings of 2015 IEEE Symposium Series on Computational Intelligence. Cape Town: IEEE Computer Society, 2015. s. 1727-1734. ISBN: 978-1-4799-7560-0.
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    JAROŠ, J.; NIKL, V.; TREEBY, B. Large-scale Ultrasound Simulations Using the Hybrid OpenMP/MPI Decomposition. In Proceedings of the 3rd International Conference on Exascale Applications and Software. Edinburgh: Association for Computing Machinery, 2015. s. 115-119. ISBN: 978-0-9926615-1-9.
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    GROEN, D.; CHACRA, D.; NASH, R.; JAROŠ, J.; BERNABEU, M.; COVENEY, P. Weighted decomposition in high-performance lattice-Boltzmann simulations: are some lattice sites more equal than others?. In Solving Software Challengesfor Exascale. Lecture Notes in Computer Science. Stockholm: Springer Verlag, 2015. s. 28-38. ISBN: 978-3-319-15975-1.
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  • 2014

    ZÁŇ, D.; JAROŠ, J. Solving Multidimensional Knapsack Problem using CUDA Accelerated PSO. In 2014 IEEE Congress on Evolutionary Computation. Beijing: IEEE Computational Intelligence Society, 2014. s. 2933-2939. ISBN: 978-1-4799-1488-3.
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    JAROŠ, J.; TYRALA, R. GPU-accelerated Evolutionary Design of the Complete Exchange Communication on Wormhole Networks. In GECCO '14 Proceedings of the 2014 conference on Genetic and evolutionary computation. New York, NY: Association for Computing Machinery, 2014. s. 1023-1030. ISBN: 978-1-4503-2662-9.
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    TREEBY, B.; JAROŠ, J.; ROHRBACH, D.; COX, B. Modelling Elastic Wave Propagation Using the k-Wave MATLAB Toolbox. In 2014 IEEE International Ultrasonics Symposium (IUS). Chicago, IL: Institute of Electrical and Electronics Engineers, 2014. s. 146-149. ISBN: 978-1-4799-7049-0.
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    NIKL, V.; JAROŠ, J. Parallelisation of the 3D Fast Fourier Transform Using the Hybrid OpenMP/MPI Decomposition. In Mathematical and Engineering Methods in Computer Science. Lecture Notes in Computer Science. Heidelberg: Springer International Publishing, 2014. s. 100-112. ISBN: 978-3-319-14895-3.
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  • 2012

    JAROŠ, J. Multi-GPU Island-Based Genetic Algorithm Solving the Knapsack Problem. In 2012 IEEE World Congress on Computational Intelligence. CA: Institute of Electrical and Electronics Engineers, 2012. s. 217-224. ISBN: 978-1-4673-1508-1.
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    JAROŠ, J.; POSPÍCHAL, P. A Fair Comparison of Modern CPUs and GPUs Running the Genetic Algorithm under the Knapsack Benchmark. Lecture Notes in Computer Science, 2012, roč. 2012, č. 7248, s. 426-435. ISSN: 0302-9743.
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  • 2011

    DVOŘÁK, V.; JAROŠ, J. A Programmable Interconnection Network for Multiple Communication Patterns. In Proceedings of the Sixth International Conference on Systems, ICONS 2011. St. Maarten: International Academy, Research, and Industry Association, 2011. s. 6-11. ISBN: 978-1-61208-002-4.
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    POSPÍCHAL, P.; SCHWARZ, J.; JAROŠ, J. Acceleration of grammatical evolution using graphics processing units: computational intelligence on consumer games and graphics hardware. In Proceedings of the 2011 GECCO conference companion on Genetic and evolutionary computation. New York: Association for Computing Machinery, 2011. s. 431-439. ISBN: 978-1-4503-0690-4.
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    JAROŠ, J.; DVOŘÁK, V. Optimizing Collective Communications on the K-port Spidergon Network. In Proceedings of the Sixth International Conference on Systems, ICONS 2011. St. Maarten: International Academy, Research, and Industry Association, 2011. s. 24-29. ISBN: 978-1-61208-002-4.
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    JAROŠ, J.; DVOŘÁK, V. Evolutionary Design of Collective Communications on Wormhole NoCs. In Autonomic Networking-On-Chip: Bio-Inspired Specification, Development, and Verification. Embedded Multi-Core Systems. London: CRC Press LLC, 2011. s. 60-94. ISBN: 978-1-4398-2911-0.
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  • 2010

    POSPÍCHAL, P.; JAROŠ, J.; SCHWARZ, J. Parallel Genetic Algorithm on the CUDA Architecture. In Applications of Evolutionary Computation. Lecture Notes in Computer Science. Berlin Heidelberg: Springer Verlag, 2010. s. 442-451. ISBN: 978-3-642-12238-5.
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    JAROŠ, J.; DVOŘÁK, V. Evolutionary-Based Conflict-Free Scheduling of Collective Communications on Spidergon NoCs. In Proceedings of 2010 Genetic and Evolutionary Computation Conference. New York: Association for Computing Machinery, 2010. s. 1171-1178. ISBN: 978-1-4503-0072-8.
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    POSPÍCHAL, P.; SCHWARZ, J.; JAROŠ, J. Parallel Genetic Algorithm Solving 0/1 Knapsack Problem Running on the GPU. In 16th International Conference on Soft Computing MENDEL 2010. Brno: Brno University of Technology, 2010. s. 64-70. ISBN: 978-80-214-4120-0.
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    JAROŠ, J. Evolutionary Design of Collective Communications on Wormhole Networks. Brno: Publishing house of Brno University of Technology VUTIUM, 2010. 183 s. ISBN: 978-80-214-4208-5.
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    DVOŘÁK, V.; JAROŠ, J. Optimizing Collective Communications on 2D-Mesh and Fat Tree NoC. In Proceedings of the Ninth International Conference on Networks ICN 2010. Piscataway, NJ: IEEE Computer Society, 2010. s. 22-27. ISBN: 978-0-7695-3979-9.
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  • 2009

    JAROŠ, J. Evolutionary Optimization of Multistage Interconnection Networks Performance. In Proceeding of Genetic and Evolutionary Computation Conference, GECCO 2009. New York: Association for Computing Machinery, 2009. s. 1537-1544. ISBN: 978-1-60558-325-9.
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    JAROŠ, J.; SCHWARZ, J. Parallel BMDA with an Aggregation of Probability Models. In Proceeding of 2009 IEEE Congress on Evolutionary Computation. Trondheim: IEEE Computational Intelligence Society, 2009. s. 1683-1690. ISBN: 978-1-4244-2959-2.
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    SEKANINA, L.; VAŠÍČEK, Z.; RŮŽIČKA, R.; BIDLO, M.; JAROŠ, J.; ŠVENDA, P. Evoluční hardware: Od automatického generování patentovatelných invencí k sebemodifikujícím se strojům. Edice Gerstner. Edice Gerstner. Praha: Nakladatelství Academia, 2009. 328 s. ISBN: 978-80-200-1729-1.
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  • 2008

    JAROŠ, J.; SCHWARZ, J. Evoluční návrh wormhole kolektivních komunikací. In Proceedings of Junior Scientist Conference 2008. Vienna: Technische Universität Wien, 2008. s. 111-112. ISBN: 978-3-200-01612-5.
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    JAROŠ, J.; DVOŘÁK, V. An Evolutionary Design Technique for Collective Communications on Optimal Diameter-Degree Networks. In 2008 Genetic and Evolutionary Computational Conference GECCO. New York: Association for Computing Machinery, 2008. s. 1539-1546. ISBN: 978-1-60558-131-6.
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    JAROŠ, J. Evolutionary Design of Fault Tolerant Collective Communications. In Evolvable Systems: From Biology to Hardware. Lecture Notes in Computer Science. Berlin: Springer Verlag, 2008. s. 261-272. ISBN: 978-3-540-85856-0.
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    SCHWARZ, J.; JAROŠ, J. Parallel Bivariate Marginal Distribution Algorithm with Probability Model Migration. In Linkage in Evolutionary Computation. LNSC, Studies in Computational Intelligence Vol. 157. Berlin / Heidelberg: Springer Verlag, 2008. s. 3-23. ISBN: 978-3-540-85067-0.
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  • 2007

    JAROŠ, J.; SCHWARZ, J. Parallel BMDA with Probability Model Migration. In Proceeding of 2007 IEEE Congress on Evolutionary Computation. Singapore: IEEE Computer Society, 2007. s. 1059-1066. ISBN: 1-4244-1340- 0.
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    SCHWARZ, J.; JAROŠ, J.; OČENÁŠEK, J. Migration of Probabilistic Models for Island- Based Bivariate EDA Algorithm. In 2007 Genetic and Evolutionary Computational Conference. Volume I. New York: Association for Computing Machinery, 2007. s. 631-631. ISBN: 9781595936974.
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    JAROŠ, J.; OHLÍDAL, M.; DVOŘÁK, V. An Evolutionary Approach to Collective Communication Scheduling. In 2007 Genetic and Evolutionary Computation Conference. Volume II. New York: Association for Computing Machinery, 2007. s. 2037-2044. ISBN: 978-1-59593-697- 4.
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    DVOŘÁK, V.; JAROŠ, J.; OHLÍDAL, M. Optimum Topology- Aware Scheduling of Collective Communications. In Proceedings of The Sixth International Conference on Networking. New York: IEEE Computer Society, 2007. s. 1-6. ISBN: 0-7695-2805- 8.
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    JAROŠ, J. Optimalizace kolektivních komunikací na wormhole propojovacích sítích. In Sborník příspěvků semináře Počítačové architektury a diagnostika pro studenty doktorského studia. Plzeň: Západočeská univerzita v Plzni, 2007. s. 93-98. ISBN: 987-80-7043-605- 9.
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  • 2006

    OHLÍDAL, M.; JAROŠ, J.; DVOŘÁK, V.; SCHWARZ, J. Evolutionary Design of OAB and AAB Communication Schedules for Interconnection Networks. In EvoStar 2006. LNCS 3907. Berlin: Springer Verlag, 2006. s. 267-278. ISBN: 978-3-540-33237- 4.
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    JAROŠ, J. Evoluční optimalizace skupinových komunikačních vzorů. In Zborník príspevkouv pracovného semináre Počítačové architektúry a diagnostika pre studenty doktorského štúdia. Bratislava: Ústav informatiky Slovenskej akadémie vied, 2006. s. 31-36. ISBN: 80-969202-2- 7.
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    JAROŠ, J.; DVOŘÁK, V. Evolutionary Design of OAB and AAB Communication Schedules for Networking Systems on Chips. In MEMICS 2006 Second Doctoral Workshop on Mathematical and Engineering Methods in Computer Science. Mikulov: Masaryk University, 2006. s. 63-68. ISBN: 80-214-3287- X.
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    JAROŠ, J.; OHLÍDAL, M.; DVOŘÁK, V. Complexity of Collective Communications on NoCs. In Proc. of 5th International Symposium on Parallel Computing in Electrical Engineering. Los Alamitos, CA 90720- 1314: IEEE Computer Society, 2006. s. 127-132. ISBN: 0-7695-2554- 7.
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    OHLÍDAL, M.; JAROŠ, J.; DVOŘÁK, V. Performance of Collective Communications on Interconnection Networks with Fat nodes and Edges. In Proceedings of the Fifth International Conference on Networking ICN 2006. Los Alamitos: IEEE Computer Society, 2006. s. 619-624. ISBN: 0-7695-2570- 9.
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    JAROŠ, J.; DVOŘÁK, V. Evolutionary Design of OAB and AAB Communication Schedules for Networking Systems on Chips. In Proc. of 2006 IEEE Design and Diagnostics of Electronic Circuits and Systems Workshop. Praha: IEEE Computer Society, 2006. s. 222-223. ISBN: 1-4244-0184- 4.
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  • 2005

    JAROŠ, J., DVOŘÁK, V. Speeding-up OAS and AAS Communication in Networking System on Chips. In Proc. of 8th IEEE Workshop on Design and Diagnostic of Electronic Circuits and Systems. Sopron: University of West Hungary, 2005. s. 206 ( s.)ISBN: 9639364487.
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    JAROŠ, J. Hledání optimálních plánů skupinové komunikace OAB. In Sborník příspěvků ze semináře Počítačové Architektury a Diagnostika. Karlovo náměstí 13, Praha: České vysoké učení technické, 2005. s. 67-72. ISBN: 80-01-03298- 1.
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    JAROŠ, J., OHLÍDAL, M., DVOŘÁK, V. Evolutionary Design of Group Communication Schedules for Interconnection Networks. In Proceedings of the 20th International Symposium Computer and Information Sciences - ISCIS 2005. Lecture Notes in Computer Science 3733. Berlin: Springer Verlag, 2005. s. 472-481. ISBN: 978-3-540-29414- 6.
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  • 2004

    SCHWARZ, J., JAROŠ, J. A PROBLEM KNOWLEDGE BASED BAYESIAN OPTIMIZATION ALGORITHM APPLIED IN MULTIPROCESSOR SCHEDULING. In Mendel Conference on Soft Computing. Brno: Faculty of Mechanical Engineering BUT, 2004. s. 83-88. ISBN: 80-214-2676- 4.
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    SCHWARZ, J., OČENÁŠEK, J., JAROŠ, J. Advanced Bayesian Optimization Algorithms Applied in Decomposition Problems. In Proceedings of ECBS 2004. Los Alamitos: IEEE Computer Society, 2004. s. 102-111. ISBN: 0-7695-2125- 8.
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    JAROŠ, J., SCHWARZ, J. Development tools for rapid prototyping of evolutionary algorithms. In Proceedings of 38th International conference MOSIS' 04. Rožnov pod Radhoštěm: 2004. s. 97-104. ISBN: 80-85988-98- 4.
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    JAROŠ, J. Vývojové prostředky pro rychlé prototypování genetických algoritmů. Brno: Grantová agentura ČR, 2004.
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    JAROŠ, J. Úloha plánování procesů na paralelním multiprocesorovém systému pomocí bayesovských optimalizačních algoritmů. In Zborník príspevkov ze seminara Počítačové Architektury a Diagnostika. Bratislava: Slovenská technická univerzita v Bratislavě, 2004. s. 60-65. ISBN: 80-969202-0- 0.
    Detail

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