Publication detail

Influence of sample variance on the phylogenetic reconstruction of protein sequences

ŠKUTKOVÁ, H. PROVAZNÍK, I. KIZEK, R.

Original Title

Influence of sample variance on the phylogenetic reconstruction of protein sequences

English Title

Influence of sample variance on the phylogenetic reconstruction of protein sequences

Type

conference paper

Language

en

Original Abstract

This study deals with the influence of sample variance of evolutionary distance estimation on phylogeny reconstruction of protein sequences. We modified the currently used methods by more precise calculation of the sample variance depending on the type of sequences and the used evolutionary model to eliminate this influence.

English abstract

This study deals with the influence of sample variance of evolutionary distance estimation on phylogeny reconstruction of protein sequences. We modified the currently used methods by more precise calculation of the sample variance depending on the type of sequences and the used evolutionary model to eliminate this influence.

Keywords

Phylogenetic tree; sample variance; evolutionary distance; pair-wise distance; Jukes-Cantor; Neighbor-Joining; BIONJ; protein sequences

RIV year

2011

Released

26.10.2011

ISBN

978-1-4503-0913-4

Book

ACM digital library: Proceedings of 4th International Symposium on Applied Sciences in Biomedical and Communication Technologies

Pages from

1

Pages to

5

Pages count

5

BibTex


@inproceedings{BUT73998,
  author="Helena {Škutková} and Ivo {Provazník} and René {Kizek}",
  title="Influence of sample variance on the phylogenetic reconstruction of protein sequences",
  annote="This study deals with the influence of sample variance of evolutionary distance estimation on phylogeny reconstruction of protein sequences. We modified the currently used methods by more precise calculation of the sample variance depending on the type of sequences and the used evolutionary model to eliminate this influence.",
  booktitle="ACM digital library: Proceedings of 4th International Symposium on Applied Sciences in Biomedical and Communication Technologies",
  chapter="73998",
  howpublished="electronic, physical medium",
  year="2011",
  month="october",
  pages="1--5",
  type="conference paper"
}