Publication detail

Compressed DNA signal representation for classification of long sequences

SEDLÁŘ, K. ŠKUTKOVÁ, H. PROVAZNÍK, I.

Original Title

Compressed DNA signal representation for classification of long sequences

Type

conference paper

Language

English

Original Abstract

The whole genome sequencing became standard part of nucleic acids' research due to the development of next-generation sequencing platforms. However, an algorithmic processing of long sequences is computationally demanding. We present a new method for lossy compression of DNA in a form of cumulative phase signals. This compression is convenient for comparison of various sequences in short time.

Keywords

cumulated phase, DNA, compression, long sequence

Authors

SEDLÁŘ, K.; ŠKUTKOVÁ, H.; PROVAZNÍK, I.

RIV year

2013

Released

29. 5. 2013

Publisher

LITERA BRNO

Location

Brno

ISBN

978-80-7375-757-1

Book

XIII pracovní setkání fyzikálních chemiků a elektrochemiků

Edition

1.

Edition number

1.

Pages from

135

Pages to

136

Pages count

2

BibTex

@inproceedings{BUT101200,
  author="Karel {Sedlář} and Helena {Vítková} and Valentine {Provazník}",
  title="Compressed DNA signal representation for classification of long sequences",
  booktitle="XIII pracovní setkání fyzikálních chemiků a elektrochemiků",
  year="2013",
  series="1.",
  number="1.",
  pages="135--136",
  publisher="LITERA BRNO",
  address="Brno",
  isbn="978-80-7375-757-1"
}