Product detail

pqsfinder: an R/Bioconductor package for identification of potential quadruplex forming sequences

HON, J. LEXA, M. MARTÍNEK, T. ZENDULKA, J.

Product type

software

Abstract

The main functionality of the this package is to detect DNA sequence patterns that are likely to fold into an intramolecular G-quadruplex (G4). Unlike many other approaches, this package is able to detect sequences responsible for G4s folded from imperfect G-runs containing bulges or mismatches and as such is more sensitive than competing algorithms.

Keywords

G-quadruplex; quadruplex; DNA; R; Bioconductor; pattern matching; searching; annotation

Create date

24. 10. 2016

Location

http://bioconductor.org/packages/release/bioc/html/pqsfinder.html

Possibilities of use

Využití výsledku jiným subjektem je v některých případech možné bez nabytí licence

Licence fee

Poskytovatel licence na výsledek nepožaduje licenční poplatek

www

http://bioconductor.org/packages/release/bioc/html/pqsfinder.html