Product detail

R/Bioconductor package for identification of triplex-forming sequences

HON, J. LEXA, M. MARTÍNEK, T. RAJDL, K.

Product type

software

Abstract

This package provides functions for identification and visualization of potential intramolecular triplex patterns in DNA sequence. The main functionality is to detect the positions of subsequences capable of folding into an intramolecular triplex (H-DNA) in a much larger sequence. The potential H-DNA (triplexes) should be made of as many cannonical nucleotide triplets as possible. The package includes visualization showing the exact base-pairing in 1D, 2D or 3D.

Keywords

H-DNA; R/Bioconductor; pattern matching; dynamic programming; triplex; searching; annotation

Create date

25. 9. 2013

Location

http://www.bioconductor.org/packages/release/bioc/html/triplex.html

Possibilities of use

Využití výsledku jiným subjektem je v některých případech možné bez nabytí licence

Licence fee

Poskytovatel licence na výsledek nepožaduje licenční poplatek

www

http://www.bioconductor.org/packages/release/bioc/html/triplex.html