Publication detail

Classification of species to higher taxa based on analysis of DNA barcodes - a bird example

MADĚRÁNKOVÁ, D. PROVAZNÍK, I.

Original Title

Classification of species to higher taxa based on analysis of DNA barcodes - a bird example

Czech Title

Klasifikace druhů do vyšších taxonů na základě analýzy DNA barcode - příklad na ptácích

English Title

Classification of species to higher taxa based on analysis of DNA barcodes - a bird example

Type

conference paper

Language

en

Original Abstract

DNA barcoding based on mitochondrial gene analysis is a modern method for species identification. We tested three variations of a novel method for species classifica-tion into families and orders based on the nucleotide density of the mtDNA barcode. We verified the methods on datasets of bird barcode sequences. The reference database of species families was created from South American bird species. North American, European, and Asian birds of the same families but mostly different species were classified effectively nearly 88.13 percent into families and 99.51 percent into orders in best case for the third variation of the method.

Czech abstract

DNA čárových kódů na základě mitochondriální genové analýzy je moderní metoda pro identifikaci druhů. Testovali jsme tři varianty nového způsobu pro druhy, klasifikace-ních do rodiny a objednávky na základě nukleotidů hustotě čárového kódu mtDNA. Ověřili jsme o metodách kolekcích sekvencí čárových kódů ptačích. Referenční databáze druhů rodin vznikl z druhů ptáků Jižní Ameriky. Severoamerických, evropských a asijských ptáků stejných rodinách, ale hlavně různými druhy byly klasifikovány efektivně téměř 88,13 procenta na 99,51 procenta rodin a do objednávek v nejlepším případě o třetí změnu metody.

English abstract

DNA barcoding based on mitochondrial gene analysis is a modern method for species identification. We tested three variations of a novel method for species classifica-tion into families and orders based on the nucleotide density of the mtDNA barcode. We verified the methods on datasets of bird barcode sequences. The reference database of species families was created from South American bird species. North American, European, and Asian birds of the same families but mostly different species were classified effectively nearly 88.13 percent into families and 99.51 percent into orders in best case for the third variation of the method.

Keywords

DNA barcode, species classification

RIV year

2013

Released

10.06.2013

Location

Tampere

ISBN

978-952-15-3092-0

Book

The 10th International Workshop on Computational Systems Biology

Pages from

75

Pages to

79

Pages count

5

BibTex


@inproceedings{BUT101868,
  author="Denisa {Maděránková} and Ivo {Provazník}",
  title="Classification of species to higher taxa based on analysis of DNA barcodes - a bird example",
  annote="DNA barcoding based on mitochondrial gene analysis is a modern method for species identification. We tested three variations of a novel method for species classifica-tion into families and orders based on the nucleotide density of the mtDNA barcode. We verified the methods on datasets of bird barcode sequences. The reference database of species families was created from South American bird species. North American, European, and Asian birds of the same families but mostly different species were classified effectively nearly 88.13 percent into families and 99.51 percent into orders in best case for the third variation of the method.",
  booktitle="The 10th International Workshop on Computational Systems Biology",
  chapter="101868",
  howpublished="electronic, physical medium",
  year="2013",
  month="june",
  pages="75--79",
  type="conference paper"
}