Publications

• 2024

  MUSILOVÁ, J.; VAFEK, Z.; PUNYIA, B.; ZIMMER, R.; HELIKAR, T.; SEDLÁŘ, K. Augusta: From RNA-Seq to Gene Regulatory Networks and Boolean Models. Computational and Structural Biotechnology Journal, 2024, vol. 23, no. December 2024, p. 783-790. ISSN: 2001-0370.
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• 2023

  ŘEHÁKOVÁ, V.; PERNICOVÁ, I.; KOUŘILOVÁ, X.; SEDLÁČEK, P.; MUSILOVÁ, J.; SEDLÁŘ, K.; KOLLER, M.; KALINA, M.; OBRUČA, S. Biosynthesis of versatile PHA copolymers by thermophilic members of the genus Aneurinibacillus. INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES, 2023, vol. 225, no. 225, p. 1588-1598. ISSN: 0141-8130.
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  PERNICOVÁ, I.; KOUŘILOVÁ, X.; ŘEHÁKOVÁ, V.; DYAGILEV, D.; MARKOVÁ, L.; SEDLÁŘ, K.; MUSILOVÁ, J.; SEDLÁČEK, P.; OBRUČA, S. Rod Aneurinibacillus – unikátní bakterie mezi termofilními producenty polyhydroxyalkanoátů. Book of abstracts of the 10th International Conference on Chemical Technology. 1. Praha: AMCA, spol. s.r.o., 2023. p. 19-19. ISBN: 978-80-88214-40-3.
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  KOUŘILOVÁ, X.; PERNICOVÁ, I.; MUSILOVÁ, J.; SEDLÁŘ, K.; OBRUČA, S. Production of biodegradable polymers by thermophilic bacteria. Czech Chemical Society Symposium Series 2. Czech chemical society symposium series. Praha: Česká společnost chemická, 2023. p. 90-90. ISSN: 2336-7202.
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  NYKRÝNOVÁ, M.; JUREČKOVÁ, K.; MUSILOVÁ, J.; SLANINOVÁ, E.; OBRUČA, S.; FLEURIOT-BLITMAN, H.; ZINN, M.; SEDLÁŘ, K. Transcriptome Analysis of Rhodospirillum rubrum - Wild Type and Mutant Strains. 11th European Symposium on Biopolymer (ESBP). 2023.
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  NYKRÝNOVÁ, M.; JUREČKOVÁ, K.; MUSILOVÁ, J.; SLANINOVÁ, E.; OBRUČA, S.; HANSLIKOVA, J.; FLEURIOT-BLITMAN, H.; ZINN, M.; SEDLÁŘ, K. Genomic and phenotypic analysis of Rhodospirillum rubrum – wild type and mutant strain. 10th International Chemical-Technological Conference (ICCT), Mikulov, Czechia. 2023.
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  KOUŘILOVÁ, X.; PERNICOVÁ, I.; MUSILOVÁ, J.; SEDLÁŘ, K.; DVOŘÁK, P.; OBRUČA, S. Thermophilic PHA Producer sui generis - Caldimonas thermodepolymerans. European Symposium on Biopolymers. Brno: 2023. p. L32 ( p.)
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  KOUŘILOVÁ, X.; PERNICOVÁ, I.; MUSILOVÁ, J.; SEDLÁŘ, K.; DVOŘÁK, P.; OBRUČA, S. Caldimonas thermodepolymerans - PHA producer with unique properties. 16th International Congress "Thermophiles-2023. Wales, United Kingdom: Bangor University, 2023. p. P15 ( p.)
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  KOUŘILOVÁ, X.; PERNICOVÁ, I.; MUSILOVÁ, J.; SEDLÁŘ, K.; OBRUČA, S. Využitelnost termofilních bakterií jako producentů biopolymerů. Book of abstracts of the 10th International Conference on Chemical Technology. 1. Praha: AMCA, spol. s.r.o., 2023. p. 20-20. ISBN: 978-80-88214-40-3.
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  MUSILOVÁ, J.; KOUŘILOVÁ, X.; HEŘMÁNKOVÁ, K.; BEZDÍČEK, M.; IEREMENKO, A.; DVOŘÁK, P.; OBRUČA, S.; SEDLÁŘ, K. Genomic and Phenotypic Comparison of Polyhydroxyalkanoates Producing Strains of genus Caldimonas/Schlegelella. Computational and Structural Biotechnology Journal, 2023, vol. 21, no. November, p. 5372-5381. ISSN: 2001-0370.
  Detail | WWW | Full text in the Digital Library

  MUSILOVÁ, J.; VAFEK, Z.; HEŘMÁNKOVÁ, K.; KOUŘILOVÁ, X.; PERNICOVÁ, I.; OBRUČA, S.; PUNYIA, B.; HELIKAR, T.; SEDLÁŘ, K. Introducing Augusta, a Python package for inferring Gene Regulatory and Boolean Networks from RNA-Seq data, and its application to the Caldimonas thermodepolymerans DSM 15344T. 2023.
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  MUSILOVÁ, J.; KOUŘILOVÁ, X.; HEŘMÁNKOVÁ, K.; BEZDÍČEK, M.; OBRUČA, S.; SEDLÁŘ, K. Comparative genomic analysis of two Schlegelella species brings novel insights into polyhydroxyalkanoates production. 10th International Chemical-Technological Conference (ICCT), Mikulov, Czechia. 2023.
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  ŠVEC, P.; BUSSE, H.; SEDLÁŘ, K.; MUSILOVÁ, J.; KRÁLOVÁ, S.; STAŇKOVÁ, E.; ŠEDO, O.; KRSEK, D.; KOUBLOVÁ, V.; KRIŠTOFOVÁ, L.; SEDLÁČEK, I. Corynebacterium antarcticum sp. nov., Corynebacterium marambiense sp. nov., Corynebacterium meridianum sp. nov., and Corynebacterium pygosceleis sp. nov., isolated from Adelie penguins (Pygoscelis adeliae). SYSTEMATIC AND APPLIED MICROBIOLOGY, 2023, vol. 46, no. 1, ISSN: 0723-2020.
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• 2022

  SEDLÁŘ, K.; MUSILOVÁ, J.; ŠKUTKOVÁ, H.; NYKRÝNOVÁ, M.; JUREČKOVÁ, K.; PERNICOVÁ, I.; SLANINOVÁ, E.; FLEURIOT-BLITMAN, H.; ZINN, M.; OBRUČA, S. Improving structural annotation of Rhodospirillum rubrum DSM 467 with RNA-Seq. 18th International Symposium on Biopolymers (ISBP). 2022.
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  KOUŘILOVÁ, X.; PERNICOVÁ, I.; MUSILOVÁ, J.; SEDLÁŘ, K.; OBRUČA, S. Some (Bacteria) Like It Hot - Towards Sustianable Produciton of Bioplastics Employing Thermophilic Bacteria. The Biomania Student Scientific Meeting 2022, Book of abstract. 1st. Brno: Masaryk University Press, 2022. p. 123-123. ISBN: 978-80-280-0040-0.
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  MUSILOVÁ, J.; KOUŘILOVÁ, X.; PERNICOVÁ, I.; BEZDÍČEK, M.; LENGEROVÁ, M.; OBRUČA, S.; SEDLÁŘ, K. Novel thermophilic polyhydroxyalkanoates producing strain Aneurinibacillus thermoaerophilus CCM 8960. Applied Microbiology and Biotechnology, 2022, vol. 106, no. 12, p. 1-13. ISSN: 1432-0614.
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  KOUŘILOVÁ, X.; PERNICOVÁ, I.; MUSILOVÁ, J.; VIDLÁKOVÁ, M.; SEDLÁŘ, K.; OBRUČA, S. K udržitelné produkci biopolymerů pomocí termofilních mikroorganismů. 2022.
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  PERNICOVÁ, I.; KOUŘILOVÁ, X.; ŘEHÁKOVÁ, V.; MUSILOVÁ, J.; SEDLÁŘ, K.; OBRUČA, S. “Hot” producers of polyhydroxyalkanoates as the future of the biotechnological industry. 2022.
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  MUSILOVÁ, J.; KOUŘILOVÁ, X.; BEZDÍČEK, M.; OBRUČA, S.; SEDLÁŘ, K. Comparison of short and long reads in structural and functional annotation of non-model bacteria. 2022. p. 11-11.
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  SEDLÁŘ, K.; MUSILOVÁ, J.; KOUŘILOVÁ, X.; BEZDÍČEK, M.; OBRUČA, S. Diversity of Schlegelella thermodepolymerans Revealed with Nanopore Sequencing. In Proceedings of the 9th International Conference on Chemical Technology. Prague: Czech Society of Industrial Chemistry, 2022. p. 373-378. ISBN: 978-80-88307-11-2.
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• 2021

  MUSILOVÁ, J.; KOUŘILOVÁ, X.; OBRUČA, S.; SEDLÁŘ, K.; LENGEROVÁ, M.; BEZDÍČEK, M. Potential functional capacity of a non-model organism Aneurinibacillus species H1. 2021.
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  MUSILOVÁ, J. PATHWAYS IDENTIFICATION IN THE GRAM-POSITIVE BACTERIUM ANEURINIBACILLUS SPECIES H1. In Proceedings II of the 27th Conference STUDENT EEICT 2021 selected papers. 1. Brno: Brno University of Technology, Faculty of Electrical Engineering and Communication, 2021. p. 111-115. ISBN: 978-80-214-5943-4.
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  PATÁKOVÁ, P.; BRANSKÁ, B.; VASYLKIVSKA, M.; JUREČKOVÁ, K.; MUSILOVÁ, J.; PROVAZNÍK, I.; SEDLÁŘ, K. Transcriptomic studies of solventogenic clostridia, Clostridium acetobutylicum and Clostridium beijerinckii. BIOTECHNOLOGY ADVANCES, 2021, vol. 58, no. 1, p. 1-18. ISSN: 1873-1899.
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  MUSILOVÁ, J.; KOUŘILOVÁ, X.; BEZDÍČEK, M.; LENGEROVÁ, M.; OBRUČA, S.; ŠKUTKOVÁ, H.; SEDLÁŘ, K. First Complete Genome of the Thermophilic Polyhydroxyalkanoates Producing Bacterium Schlegelella thermodepolymerans DSM 15344. GENOME BIOL EVOL, 2021, vol. 13, no. 4, p. 1-13. ISSN: 1759-6653.
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  MUSILOVÁ, J.; SEDLÁŘ, K. Tools for Time-Course Simulation in Systems Biology: A Brief Overview. Briefings in Bioinformatics, 2021, vol. 22, no. 5, p. 1-15. ISSN: 1477-4054.
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  KOUŘILOVÁ, X.; PERNICOVÁ, I.; MUSILOVÁ, J.; SEDLÁŘ, K.; OBRUČA, S. Screening cultivation mode and production of the new bacterium Aneurinibacillus thermoaerophilus CCM 8960. The Eurobiotech Journal. Sciendo, 2021. p. 98-98.
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  SCHWARZEROVÁ, J.; MUSILOVÁ, J.; JUREČKOVÁ, K.; BRANSKÁ, B.; PROVAZNÍK, I.; PATÁKOVÁ, P.; SEDLÁŘ, K. Operon Structure Inference in Clostridium beijerinckii NRRL B-589 using RNA-Seq. In 8th International Conference on Chemical Technology. 2021. p. 284-289. ISBN: 978-80-88307-08-2.
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• 2020

  KOUŘILOVÁ, X.; PERNICOVÁ, I.; SEDLÁŘ, K.; MUSILOVÁ, J.; SEDLÁČEK, P.; KALINA, M.; KOLLER, M.; OBRUČA, S. Production of polyhydroxyalkanoates (PHA) by a thermophilic strain of Schlegelella thermodepolymerans from xylose rich substrates. BIORESOURCE TECHNOLOGY, 2020, vol. 315, no. 8, p. 1-7. ISSN: 0960-8524.
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  SEDLÁŘ, K.; VASYLKIVSKA, M.; MUSILOVÁ, J.; BRANSKÁ, B.; PROVAZNÍK, I.; PATÁKOVÁ, P. Phenotypic and genomic analysis of isopropanol and 1,3-propanediol producer Clostridium diolis DSM 15410. GENOMICS, 2020, vol. 113, no. 1, p. 1109-1119. ISSN: 0888-7543.
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  MUSILOVÁ, J. HOMOLOGSEARCH: R Package for Identyfying Homologous Sequences between Model and Non-model Organisms. In Proceeding I of the 26th Conference STUDENT EEICT 2020. Brno: Vysoké učení technické v Brně, Fakulta elektrotechniky a komunikačních technologií, 2020. p. 334-338. ISBN: 978-80-214-5867-3.
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  KOUŘILOVÁ, X.; MUSILOVÁ, J.; SEDLÁŘ, K.; BEDNÁROVÁ, K.; PERNICOVÁ, I.; OBRUČA, S. Thermophilic Bacterium Schlegelella thermodepolymerans DSM 15344 as a Producer of Polyhydroxyalkanoates. Studentská odborná konference CHEMIE JE ŽIVOT 2020. Brno: Vysoké učení technické v Brně, Fakulta chemická, 2020. p. 90-91. ISBN: 978-80-214-5920-0.
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• 2019

  MUSILOVÁ, J.; JUREČKOVÁ, K.; KOLEK, J.; PROVAZNÍK, I.; PATÁKOVÁ, P.; SEDLÁŘ, K. Signaling Pathway for Butanol Production in Clostridium beijerinckii NRRL B-598. In Proceedings of the 7th International Conference on Chemical Technology. Czech Society of Industrial Chemistry, 2019. p. 46-52. ISBN: 978-80-88307-00-6.
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  MUSILOVÁ, J. Signaling Pathway for Butanol Production in Clostridium beijerinckii NRRL B-598. In Proceedings of the 25th Conference STUDENT EEICT 2019. Brno: Vysoké učení technické v Brně, Fakulta elektrotechniky a komunikačních technologií, 2019. p. 187-190. ISBN: 978-80-214-5735-5.
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  PATÁKOVÁ, P.; VASYLKIVSKA, M.; JUREČKOVÁ, K.; MUSILOVÁ, J.; KOLEK, J.; BRANSKÁ, B.; SEDLÁŘ, K. Stress response to butyric acid and butanol formation in Clostridium beijerinckii at transcriptional level. 14th International Symposium on the Genetics of Industrial Microorganisms - Abstracts. 2019. p. 209-209.
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• 2018

  MUSILOVÁ, J.; KOŠČOVÁ, P. Network Analysis of Proteins Associated with Schizophrenia. In Proceedings of the 24rd Conference STUDENT EEICT 2018. Brno: 2018. p. 273-275. ISBN: 978-80-214-5614-3.
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• 2017

  MUSILOVÁ, J.; KOŠČOVÁ, P. Interakce léčiv užívaných při léčbě schizofrenie. In Proceedings of the 23rd Conference STUDENT EEICT 2017. Brno: 2017. p. 18-20. ISBN: 978-80-214-5496-5.
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